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Handle various IEDB outputs with incorrect data #1050

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susannasiebert merged 2 commits into hotfix from iedb_api_incorrect_data

Jan 17, 2024

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susannasiebert commented Jan 12, 2024 •

edited

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As part of investigating IEDB API output anomalies, I identified four distinct outputs that don't match the inputs:

A string of tab and new line character
Header only
Predicted peptides do not match the requested list of peptides. Allele and length match.
Predicted peptides include requested peptides but also include additional predictions for other peptides. Allele and length match.

This PR handles all of the above cases and retries the request when these situations are encountered.

susannasiebert added 2 commits

January 12, 2024 10:07


          Handle various IEDB outputs with incorrect data

06d960d


          Write IEDB API errors to a log file instead of stdout

159bdcd

susannasiebert merged commit d5499ed into hotfix

5 of 6 checks passed

susannasiebert deleted the iedb_api_incorrect_data branch

January 24, 2024 16:12

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