Merge pull request #6700 from SantaMcCloud/update_dm_kraken2

Kraken2 DM: update to newest DBs
galaxyproject · Jan 25, 2025 · f43fe42 · f43fe42
2 parents 1805997 + d7c567c
commit f43fe42
Showing 1 changed file with 18 additions and 1 deletion.
diff --git a/data_managers/data_manager_build_kraken2_database/data_manager/kraken2_build_database.xml b/data_managers/data_manager_build_kraken2_database/data_manager/kraken2_build_database.xml
@@ -2,7 +2,7 @@
     <description>database builder</description>
     <macros>
         <token name="@TOOL_VERSION@">2.1.3</token>
-        <token name="@VERSION_SUFFIX@">5</token>
+        <token name="@VERSION_SUFFIX@">6</token>
         <token name="@PROFILE@">22.01</token>
         <xml name="common_params">
             <param name="kmer_len" type="integer" value="35" label="K-mer length in BP" />
@@ -113,6 +113,7 @@ python '$__tool_directory__/kraken2_build_database.py'
             <when value="standard_prebuilt">
                 <conditional name="prebuild">
                     <param name="prebuilt_date" type="select" label="Select index build date">
+                        <option value="2024-12-28">December 28, 2024</option>
                         <option value="2024-09-04">September 4, 2024</option>
                         <option value="2024-06-05">June 5, 2024</option>
                         <option value="2024-01-12">January 12, 2024</option>
@@ -123,6 +124,22 @@ python '$__tool_directory__/kraken2_build_database.py'
                         <option value="2020-12-02">December 2, 2020</option>
                         <option value="2020-09-19">September 19, 2020</option>
                     </param>
+                    <when value="2024-12-28">
+                        <param name="prebuilt_db" type="select" label="Select a prebuilt Refseq index to download">
+                            <expand macro="viral"/>
+                            <expand macro="minusb"/>
+                            <expand macro="standard"/>
+                            <expand macro="standard_08gb"/>
+                            <expand macro="standard_16gb"/>
+                            <expand macro="pluspf"/>
+                            <expand macro="pluspf_08gb"/>
+                            <expand macro="pluspf_16gb"/>
+                            <expand macro="pluspfp"/>
+                            <expand macro="pluspfp_08gb"/>
+                            <expand macro="pluspfp_16gb"/>
+                            <expand macro="core_nt"/>
+                        </param>
+                    </when>
                     <when value="2024-09-04">
                         <param name="prebuilt_db" type="select" label="Select a prebuilt Refseq index to download">
                             <expand macro="viral"/>