Merge pull request #17055 from bernt-matthias/topic/quote-singularity…

…-env-params Quote singularity env parameters
galaxyproject · Nov 21, 2023 · 1181e7d · 1181e7d
2 parents c88fa03 + a0f0b83
commit 1181e7d
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/lib/galaxy/tool_util/deps/singularity_util.py b/lib/galaxy/tool_util/deps/singularity_util.py
@@ -81,7 +81,7 @@ def build_singularity_run_command(
     for key, value in env:
         if key == "HOME":
             home = value
-        command_parts.extend([f"SINGULARITYENV_{key}={value}"])
+        command_parts.extend([f'SINGULARITYENV_{key}="{value}"'])
     command_parts += _singularity_prefix(
         singularity_cmd=singularity_cmd,
         sudo=sudo,