feat: rename analysis portals to resources and add ncbi links (#214) (#…

…220)
galaxyproject · Jan 20, 2025 · 3c12dea · 3c12dea
1 parent c53cba3
commit 3c12dea
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Showing 4 changed files with 43 additions and 14 deletions.
diff --git a/app/viewModelBuilders/catalog/brc-analytics-catalog/common/constants.ts b/app/viewModelBuilders/catalog/brc-analytics-catalog/common/constants.ts
@@ -1,2 +1,4 @@
 export const GENOME_BROWSER = "UCSC Genome Browser";
+export const NCBI_ASSEMBLY = "NCBI Genome Assembly";
+export const NCBI_TAXONOMY = "NCBI Taxonomy";
 export const NCBI_DATASETS_URL = "https://www.ncbi.nlm.nih.gov/datasets";
diff --git a/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts b/app/viewModelBuilders/catalog/brc-analytics-catalog/common/viewModelBuilders.ts
@@ -10,7 +10,12 @@ import {
   BRCDataCatalogOrganism,
 } from "../../../../apis/catalog/brc-analytics-catalog/common/entities";
 import * as C from "../../../../components";
-import { GENOME_BROWSER, NCBI_DATASETS_URL } from "./constants";
+import {
+  GENOME_BROWSER,
+  NCBI_ASSEMBLY,
+  NCBI_DATASETS_URL,
+  NCBI_TAXONOMY,
+} from "./constants";
 import { ColumnDef } from "@tanstack/react-table";
 import {
   BRC_DATA_CATALOG_CATEGORY_KEY,
@@ -309,19 +314,41 @@ export const buildGenomeAnalysisPortals = (
   genome: BRCDataCatalogGenome
 ): ComponentProps<typeof C.AnalysisPortals> => {
   return {
-    portals: genome.ucscBrowserUrl
-      ? [
-          {
-            imageProps: {
-              alt: GENOME_BROWSER,
-              src: "/analysis-portals/ucsc-genome.png",
-              width: 20,
+    portals: [
+      ...(genome.ucscBrowserUrl
+        ? [
+            {
+              imageProps: {
+                alt: GENOME_BROWSER,
+                src: "/analysis-portals/ucsc-genome.png",
+                width: 20,
+              },
+              label: GENOME_BROWSER,
+              url: genome.ucscBrowserUrl,
             },
-            label: GENOME_BROWSER,
-            url: genome.ucscBrowserUrl,
-          },
-        ]
-      : [],
+          ]
+        : []),
+      {
+        imageProps: {
+          alt: NCBI_ASSEMBLY,
+          src: "/analysis-portals/ncbi.png",
+          width: 20,
+        },
+        label: NCBI_ASSEMBLY,
+        url: `${NCBI_DATASETS_URL}/genome/${genome.accession}`,
+      },
+      {
+        imageProps: {
+          alt: NCBI_TAXONOMY,
+          src: "/analysis-portals/ncbi.png",
+          width: 20,
+        },
+        label: NCBI_TAXONOMY,
+        url: `${NCBI_DATASETS_URL}/taxonomy/${encodeURIComponent(
+          genome.ncbiTaxonomyId
+        )}`,
+      },
+    ],
   };
 };
 

diff --git a/public/analysis-portals/ncbi.png b/public/analysis-portals/ncbi.png
diff --git a/site-config/brc-analytics/local/entity/genome/analysisMethodsSideColumn.ts b/site-config/brc-analytics/local/entity/genome/analysisMethodsSideColumn.ts
@@ -32,7 +32,7 @@ export const sideColumn: ComponentsConfig = [
                       {
                         component: C.SectionTitle,
                         props: {
-                          title: "Analysis Portals",
+                          title: "Resources",
                         },
                       } as ComponentConfig<typeof C.SectionTitle>,
                       {