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Dev #31

Merged
merged 15 commits into from
Jan 27, 2024
Merged

Dev #31

merged 15 commits into from
Jan 27, 2024

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fmalmeida
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* Create CITATION.cff

* Update CITATION.cff

* Update CITATION.cff

* Update CITATION.cff

* update docs to have citations

* update citation console message

* update changelog

* update version information
* add readthedocs yml

* add bacannot docs template

* add mkdocs template

* update homepage

* add run with conda badge

* update installation page

* update quickstart page

* remove unused samplesheet page

* remove unused files

* update manual page

* update width

* update config page

* convert examples page to markdown

* start page do show non-bacterial dataset analysis

* added / finished non-bacterial example page

* updating the outputs page of the pipeline

* fixing comment lines

* fix profiles markdown and finalize docs

* add example in profiles page

* fix code box

* remove bacannot data

* add images as example
@fmalmeida fmalmeida marked this pull request as ready for review January 27, 2024 16:12
@fmalmeida fmalmeida merged commit dad810c into master Jan 27, 2024
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