Update exotic notebook

stellarphot/notebooks/photometry/07-transit-fit-with-exotic.ipynb

@@ -10,15 +10,16 @@
     "from pathlib import Path\n",
     "import pickle\n",
     "\n",
-    "import numpy as np\n",
+    "import numpy as np \n",
     "\n",
-    "from astropy.table import Table\n",
+    "from astropy.table import Table \n",
     "\n",
     "#from try_json_editing_rev1 import whole_thing, generate_json_file_name, exotic_arguments, get_values_from_widget\n",
     "from stellarphot.transit_fitting.gui import generate_json_file_name, exotic_arguments, get_values_from_widget, exotic_settings_widget, populate_TOI_boxes\n",
     "from stellarphot.settings.fits_opener import FitsOpener\n",
     "from stellarphot import PhotometryData\n",
-    "from stellarphot.io import TOI"
+    "from stellarphot.io import TOI\n",
+    "from stellarphot.gui_tools.photometry_widget_functions import TessAnalysisInputControls"
    ]
   },
   {
@@ -30,15 +31,49 @@
     "This notebook will do a different kind of fit to your exoplanet data. It takes longer to run than the fitting we've done so far, which is why we didn't begin with this type of fit."
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### 0. Get some data\n",
+    "\n",
+    "+ Select photometry file with relative flux\n",
+    "+ Select passband\n",
+    "+ Select TESS info file"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
-    "fits_opener = FitsOpener(title=\"Select your photometry/relative flux file\", filter_pattern=[\"*.ecsv\"])\n",
+    "taic = TessAnalysisInputControls()\n",
+    "taic"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {
+    "tags": []
+   },
+   "outputs": [],
+   "source": [
+    "# 👉 File with photometry, including flux\n",
+    "photometry_file = taic.photometry_data_file\n",
+    "inp_photometry = taic.phot_data\n",
     "\n",
-    "fits_opener.file_chooser"
+    "# 👉 File with exoplanet info in\n",
+    "tess_info_output_file = taic.tic_info_file\n",
+    "tess_info = TOI.model_validate_json(tess_info_output_file.read_text())"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "### Get just the target star and some information about it"
    ]
   },
   {
@@ -47,10 +82,17 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "input_data_file = fits_opener.path\n",
-    "toi_info_file = Path(\"TIC-194461202-info.json\")\n",
-    "\n",
-    "tess_info = TOI.model_validate_json(toi_info_file.read_text())"
+    "if np.isnan(inp_photometry['bjd']).all():\n",
+    "    inp_photometry.add_bjd_col()"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "photometry = inp_photometry.lightcurve_for(1, flux_column=\"relative_flux\", passband=taic.passband).remove_nans()"
    ]
   },
   {
@@ -70,12 +112,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "inp_data = PhotometryData.read(input_data_file)\n",
-    "inp_data = inp_data[inp_data['star_id'] == 1]\n",
-    "inp_data.add_bjd_col()\n",
-    "# inp_data = inp_data[inp_data['BJD'] > 2459795.75]\n",
     "\n",
-    "out_data = inp_data['bjd', 'relative_flux', 'relative_flux_error', 'airmass']\n",
+    "out_data = photometry['bjd', 'relative_flux', 'relative_flux_error', 'airmass']\n",
     "out_data.write(exotic_data_file, overwrite=True)"
    ]
   },
@@ -90,6 +128,13 @@
     "populate_TOI_boxes(tess_info, settings.value_widget)"
    ]
   },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "## YOU MAY NEED DATA FROM HERE:  https://exofop.ipac.caltech.edu/tess/\n"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -145,9 +190,16 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "!exotic --override --pre TIC_194461202-2024-10-08-SR.json"
+    "!exotic --override --pre TIC_370981403-2024-10-18-SG.json"
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -158,7 +210,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "stelldev-pyd2",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -172,7 +224,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.11.9"
+   "version": "3.12.3"
   }
  },
  "nbformat": 4,