v0.6.0

Added

• mean_quality column to bamstats output, equivalent to that from fastcat.
• optional per-reference summary file for bamstats similar to samtools flagstats.

v0.5.0

Changed

• Behaviour of -x/--recurse. Top-level directory input will always be searched for
  data. Turning on recursion now exclusively refers to descending into child (and
  subsequent) directories.

v0.4.12

Fixed

• Updated kseq.h to allow exit on broken fastq/a stream.

v0.4.11

Changed

• fastcat will exit non-zero if an input file (named or recursed) cannot be opened

v0.4.10

Fixed

• Use of uninitialized memory in thread pool init, leading to memory leak.

v0.4.9

Fixed

• Handle BAM_CEQUAL and BAM_CDIFF that some aligners like to use.

v0.4.8

Fixed

• Doubled tab in output header.

v0.4.7

Changed

• Build conda package using bioconda's htslib.

Fixed

• Occasional hanging on exit.

v0.4.6

Fixed

• Missing tab character in output header.

v0.4.5

Changed

• Pin openssl version in conda build to that which work across Python versions.