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Adding cryolo v1.9.9's easyconfig #22146

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42 changes: 42 additions & 0 deletions easybuild/easyconfigs/c/cryolo/cryolo-1.9.9-foss-2022a.eb
Original file line number Diff line number Diff line change
@@ -0,0 +1,42 @@
easyblock = 'PythonPackage'

name = 'cryolo'
version = '1.9.9'

homepage = 'https://cryolo.readthedocs.io/'

description = """an application for fast and accurate cryo-EM particle picking.
It’s based on convolutional neural networks and utilizes the popular You Only Look Once (YOLO) object detection system."""

toolchain = {'name': 'foss', 'version': '2022a'}

# this is a bundle of Python packages
exts_defaultclass = 'PythonPackage'

dependencies = [
('Python', '3.8.10'),
('LibTIFF', '4.3.0'),
('GTK3', '3.24.33'),
]

multi_deps_load_default = False
installopts = '--no-index'
sources = ['requirements-%(version)s.txt']
checksums = [
'c1d6b4161875fbe7553578c5d1eebc58db8a5977c9db488c0ef9e6fbc3b75f6a',
]


unpack_sources = False
use_pip = True
use_pip_for_deps = True
use_pip_requirement = True
fix_python_shebang_for = ['bin/*']
sanity_pip_check = True

sanity_check_paths = {
'files': ['bin/cryolo_gui.py', 'bin/cryolo_train.py', 'bin/cryolo_evaluation.py'],
'dirs': [],
}

moduleclass = 'math'
37 changes: 37 additions & 0 deletions easybuild/easyconfigs/c/cryolo/requirements-1.9.9.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,37 @@
--index-url https://mirrors.aliyun.com/pypi/simple/
--extra-index-url https://pypi.ngc.nvidia.com
setuptools<66
pip
Brotli==1.1.0
certifi==2024.8.30
cffi==1.17.0
charset-normalizer==3.4.0
h2==4.1.0
hpack==4.0.0
hyperframe==6.0.1
idna==3.10
numpy==1.18.5
scikit-image==0.19.3
scikit-learn==0.23.2
scipy==1.9.3
tifffile==2020.9.3
imageio==2.15.0
packaging==24.2
pathlib2==2.3.7.post1
Pillow==9.4.0
ply==3.11
pycparser==2.22
Pypubsub==4.0.3
PyQt5==5.15.7
PyQt5-sip==12.11.0
PySocks==1.7.1
requests==2.32.3
sip==6.7.12
six==1.16.0
toml==0.10.2
tomli==2.0.2
urllib3==2.2.3
wheel==0.45.1
wxPython==4.1.1
zstandard==0.23.0
cryolo[c11]==1.9.9