Mid 2019 release

• Changing API to int64_t indptr, int64_t indices and float64 data as input from python.
• Tested on GM12878 primary+replicate (data from Rao 2014) with HiCExplorer's hicCorrectMatrix, CPU 2x Intel(R) Xeon(R) CPU E5-2630 @ 2.20 GHz, 984 GB memory:
  • On 25kb resolution:
    • old implementation 57 min runtime, 159 GB memory
    • new implementation 1h 8 min runtime, 164 GB memory
  • On 10kb resolution
    • old implementation: > 984 GB of memory, machine run out of memory
    • new implementation: 1h 42 mins runtime, 225 GB memory

0.0.4

fixed the omp issue

0.0.3

Removed extra_link_args for macOS

0.0.2

removing openmp for macos

0.0.1

First release