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diff --git a/.buildinfo b/.buildinfo
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+# Sphinx build info version 1
+# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
+config: cbd6834f28465f1e61c88d3b52d6572b
+tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/.doctrees/citation.doctree b/.doctrees/citation.doctree
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diff --git a/.doctrees/tutorials/quickstart.doctree b/.doctrees/tutorials/quickstart.doctree
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diff --git a/_sources/citation.rst.txt b/_sources/citation.rst.txt
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+
+Credit
+------
+
+This package is primarily written by `Griffin Chure <https://gchure.github.io>`_ 
+with contributions from `Jonas Cremer <https://cremerlab.github.io>`_ who 
+are both at Stanford University. Griffin Chure is supported by a National Science 
+Foundation Postdoctoral Research Fellowship under the award number 2010807. 
+
+Citing `hplc-py`
+================
+If you end up using `hplc-py` in your research, great! Please consider citing 
+the project. The package is being actively developed and improved, so please 
+ensure that you cite the version number you are using.
+
+.. code-block:: bibtex
+    
+    @misc{#10.5281/zenodo.8197910,
+          doi = {10.5281/zenodo.8197910}
+          url = {https://doi.org/10.5281/zenodo.8197910},
+          author = {Chure, Griffin and Cremer, Jonas},
+          keywords = {Github},
+          title = {cremerlab/hplc-py: Version 0.2.00},
+          publisher = {Zenodo},
+          year = {2023}
+         }
diff --git a/_sources/getting_started/algorithm.ipynb.txt b/_sources/getting_started/algorithm.ipynb.txt
diff --git a/_sources/index.rst.txt b/_sources/index.rst.txt
@@ -0,0 +1,104 @@
+.. image:: _static/page_logo.svg
+   :align: center
+
+.. image:: https://img.shields.io/badge/License-GPLv3-blue.svg
+   :target: https://www.gnu.org/licenses/gpl-3.0
+
+.. image:: https://github.com/cremerlab/hplc-py/actions/workflows/pytest.yaml/badge.svg
+   :target: https://github.com/cremerlab/hplc-py/actions/workflows/pytest.yaml
+
+.. image:: https://codecov.io/gh/cremerlab/hplc-py/branch/main/graph/badge.svg?token=WXL50JVR6C
+   :target: https://codecov.io/gh/cremerlab/hplc-py
+
+.. image:: https://badge.fury.io/py/hplc-py.svg
+   :target: https://pypi.org/project/hplc-py/#description 
+
+.. image:: https://zenodo.org/badge/667610900.svg
+   :target: https://zenodo.org/badge/latestdoi/667610900
+
+
+----
+
+About
+=====
+
+Welcome to the documentation for `hplc-py`! This package provides a limited, yet
+robust, interface for accurate and efficient peak detection and quantification 
+from chromatography data, specifically from High-Performance Liquid Chromatography (HPLC).
+
+Chromatography is an analytical technique which allows for quantitative
+characterization of a chemical mixture. While many of the technical details of
+HPLC are now automated, the programmatic cleaning and processing of the
+resulting data can be cumbersome and often requires extensive manual labor. The 
+goal of `hplc-py` is to reduce this manual labor and make running of the 
+chromatographic separation the most time-consuming step in the process.
+
+Installation
+------------
+You can install `hplc-py` using pip::
+
+   $ pip install --upgrade hplc-py
+
+Dependencies for `hplc-py` are as follows:
+
+- Python 3.9 or newer
+- NumPy_ 
+- SciPy_
+- Pandas_
+- Seaborn_
+- Tqdm_
+- Termcolor_
+
+Contributing
+------------
+Development of `hplc-py` occurs on various feature branches which are merged and 
+released upon approval by Griffin.
+
+Please submit issues and bug reports using the `issue tracker <https://github.com/cremerlab/hplc-py/issues>`_.  When filing an issue,
+provide a reproducible example that demonstrates the bug or problem. Feature
+requests can also be made through the issue tracker, though it is up to the
+discretion of the maintainers what is worth implementing. 
+
+.. _NumPy: http://www.numpy.org/
+.. _SciPy: http://www.scipy.org/
+.. _Pandas: http://pandas.pydata.org/
+.. _tqdm: https://tqdm.github.io/
+.. _Matplotlib: https://matplotlib.org/
+.. _Seaborn: https://seaborn.pydata.org/
+.. _Termcolor: https://pypi.org/project/termcolor/
+
+
+.. toctree::
+   :maxdepth: 1
+   :caption: Tutorials
+   :hidden:
+
+   tutorials/quickstart.ipynb
+   tutorials/calibration_curve.ipynb
+
+.. toctree::
+   :maxdepth: 1
+   :caption: How It Works
+   :hidden:
+
+   methodology/problem.ipynb
+   methodology/baseline.ipynb
+   methodology/peak_detection.ipynb
+   methodology/fitting.ipynb
+   methodology/scoring.ipynb
+
+.. toctree::
+   :maxdepth: 1
+   :caption: API Documentation
+   :hidden: 
+
+   quant
+   io
+
+.. toctree::
+   :maxdepth: 1
+   :caption: Credit & Citation
+   :hidden:
+
+   citation
+
diff --git a/_sources/io.rst.txt b/_sources/io.rst.txt
@@ -0,0 +1,6 @@
+`hplc.io`
+=====================
+.. automodule:: hplc.io
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/methodology/baseline.ipynb.txt b/_sources/methodology/baseline.ipynb.txt
diff --git a/_sources/methodology/fitting.ipynb.txt b/_sources/methodology/fitting.ipynb.txt
diff --git a/_sources/methodology/peak_detection.ipynb.txt b/_sources/methodology/peak_detection.ipynb.txt
diff --git a/_sources/methodology/problem.ipynb.txt b/_sources/methodology/problem.ipynb.txt
diff --git a/_sources/methodology/scoring.ipynb.txt b/_sources/methodology/scoring.ipynb.txt
diff --git a/_sources/quant.rst.txt b/_sources/quant.rst.txt
@@ -0,0 +1,6 @@
+`hplc.quant`
+=====================
+.. automodule:: hplc.quant
+   :members:
+   :undoc-members:
+   :show-inheritance:
diff --git a/_sources/quickstart.ipynb.txt b/_sources/quickstart.ipynb.txt
diff --git a/_sources/tutorials/calibration_curve.ipynb.txt b/_sources/tutorials/calibration_curve.ipynb.txt
diff --git a/_sources/tutorials/quickstart.ipynb.txt b/_sources/tutorials/quickstart.ipynb.txt
diff --git a/_static/_sphinx_javascript_frameworks_compat.js b/_static/_sphinx_javascript_frameworks_compat.js
@@ -0,0 +1,123 @@
+/* Compatability shim for jQuery and underscores.js.
+ *
+ * Copyright Sphinx contributors
+ * Released under the two clause BSD licence
+ */
+
+/**
+ * small helper function to urldecode strings
+ *
+ * See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
+ */
+jQuery.urldecode = function(x) {
+    if (!x) {
+        return x
+    }
+    return decodeURIComponent(x.replace(/\+/g, ' '));
+};
+
+/**
+ * small helper function to urlencode strings
+ */
+jQuery.urlencode = encodeURIComponent;
+
+/**
+ * This function returns the parsed url parameters of the
+ * current request. Multiple values per key are supported,
+ * it will always return arrays of strings for the value parts.
+ */
+jQuery.getQueryParameters = function(s) {
+    if (typeof s === 'undefined')
+        s = document.location.search;
+    var parts = s.substr(s.indexOf('?') + 1).split('&');
+    var result = {};
+    for (var i = 0; i < parts.length; i++) {
+        var tmp = parts[i].split('=', 2);
+        var key = jQuery.urldecode(tmp[0]);
+        var value = jQuery.urldecode(tmp[1]);
+        if (key in result)
+            result[key].push(value);
+        else
+            result[key] = [value];
+    }
+    return result;
+};
+
+/**
+ * highlight a given string on a jquery object by wrapping it in
+ * span elements with the given class name.
+ */
+jQuery.fn.highlightText = function(text, className) {
+    function highlight(node, addItems) {
+        if (node.nodeType === 3) {
+            var val = node.nodeValue;
+            var pos = val.toLowerCase().indexOf(text);
+            if (pos >= 0 &&
+                !jQuery(node.parentNode).hasClass(className) &&
+                !jQuery(node.parentNode).hasClass("nohighlight")) {
+                var span;
+                var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg");
+                if (isInSVG) {
+                    span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
+                } else {
+                    span = document.createElement("span");
+                    span.className = className;
+                }
+                span.appendChild(document.createTextNode(val.substr(pos, text.length)));
+                node.parentNode.insertBefore(span, node.parentNode.insertBefore(
+                    document.createTextNode(val.substr(pos + text.length)),
+                    node.nextSibling));
+                node.nodeValue = val.substr(0, pos);
+                if (isInSVG) {
+                    var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect");
+                    var bbox = node.parentElement.getBBox();
+                    rect.x.baseVal.value = bbox.x;
+                    rect.y.baseVal.value = bbox.y;
+                    rect.width.baseVal.value = bbox.width;
+                    rect.height.baseVal.value = bbox.height;
+                    rect.setAttribute('class', className);
+                    addItems.push({
+                        "parent": node.parentNode,
+                        "target": rect});
+                }
+            }
+        }
+        else if (!jQuery(node).is("button, select, textarea")) {
+            jQuery.each(node.childNodes, function() {
+                highlight(this, addItems);
+            });
+        }
+    }
+    var addItems = [];
+    var result = this.each(function() {
+        highlight(this, addItems);
+    });
+    for (var i = 0; i < addItems.length; ++i) {
+        jQuery(addItems[i].parent).before(addItems[i].target);
+    }
+    return result;
+};
+
+/*
+ * backward compatibility for jQuery.browser
+ * This will be supported until firefox bug is fixed.
+ */
+if (!jQuery.browser) {
+    jQuery.uaMatch = function(ua) {
+        ua = ua.toLowerCase();
+
+        var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
+            /(webkit)[ \/]([\w.]+)/.exec(ua) ||
+            /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) ||
+            /(msie) ([\w.]+)/.exec(ua) ||
+            ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) ||
+            [];
+
+        return {
+            browser: match[ 1 ] || "",
+            version: match[ 2 ] || "0"
+        };
+    };
+    jQuery.browser = {};
+    jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true;
+}
diff --git a/_static/algorithm/baseline_correction.ipynb b/_static/algorithm/baseline_correction.ipynb
@@ -0,0 +1,52 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# Step 1: Baseline Correction"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "import numpy as np\n",
+    "import pandas as pd \n",
+    "import matplotlib.pyplot as plt \n",
+    "import seaborn as sns\n",
+    "from hplc.quant import Chromatogram\n",
+    "sns.set()"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": ".venv",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.12"
+  },
+  "orig_nbformat": 4
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}