Adds bioconda recipe conversion integration test #41
Workflow file for this run
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| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| name: Test | |
| jobs: | |
| # NOTE: Tests run via `pre-commit` | |
| pre-commit: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 | |
| - uses: ./.github/actions/setup-env | |
| with: | |
| python-version: "3.11" | |
| # Executes `pre-commit` with the `make` directive to ensure all dependencies are found | |
| - run: | | |
| source $CONDA/bin/activate | |
| conda activate conda-recipe-manager | |
| make pre-commit | |
| test: | |
| runs-on: ubuntu-latest | |
| name: Test on ${{ matrix.python-version }} | |
| strategy: | |
| matrix: | |
| python-version: ["3.11"] # TODO: Bump this to 3.12 when supported and drop 3.11 (covered in pre-commit) | |
| steps: | |
| - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 | |
| - uses: ./.github/actions/setup-env | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - run: | | |
| source $CONDA/bin/activate | |
| conda activate conda-recipe-manager | |
| make test | |
| build-recipe-conda: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 | |
| - name: Build package in conda build | |
| run: | | |
| source $CONDA/bin/activate | |
| conda install -y conda-build | |
| conda build recipe/meta.yaml | |
| # Eat our own dog food and build this project with rattler-build by converting our existing recipe. | |
| build-recipe-rattler: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 | |
| - uses: ./.github/actions/setup-env | |
| with: | |
| python-version: "3.11" | |
| - name: Build package in rattler-build (experimental) | |
| run: | | |
| source $CONDA/bin/activate | |
| conda activate conda-recipe-manager | |
| conda install -y -c conda-forge rattler-build | |
| convert -o recipe/recipe.yaml recipe/meta.yaml | |
| rattler-build build -r recipe/ | |
| ## Integration tests ## | |
| integration-rattler: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 45 | |
| name: Test on ${{ matrix.test-directory }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| test-directory: | |
| - anaconda_recipes | |
| - bioconda_recipes_01 | |
| - bioconda_recipes_02 | |
| # - bioconda_recipes_03 | |
| # - bioconda_recipes_04 | |
| include: | |
| - test-directory: anaconda_recipes | |
| convert-success: 0.80 | |
| rattler-success: 0.50 | |
| - test-directory: bioconda_recipes_01 | |
| convert-success: 0.55 | |
| rattler-success: 0.02 | |
| - test-directory: bioconda_recipes_02 | |
| convert-success: 0.55 | |
| rattler-success: 0.08 | |
| # TODO Figure out: these tests continually crash the GitHub runner without logs or a timeout | |
| #- test-directory: bioconda_recipes_03 | |
| # convert-success: 0.55 | |
| # rattler-success: 0.05 | |
| #- test-directory: bioconda_recipes_04 | |
| # convert-success: 0.55 | |
| # rattler-success: 0.05 | |
| steps: | |
| - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4.1.1 | |
| - uses: ./.github/actions/setup-env | |
| with: | |
| python-version: "3.11" | |
| - name: Convert recipes and dry-run rattler-build | |
| run: | | |
| source $CONDA/bin/activate | |
| conda activate conda-recipe-manager | |
| conda install -y -c conda-forge rattler-build | |
| convert -t -m ${{ matrix.convert-success }} -o recipe.yaml tests/test_aux_files/integration/${{ matrix.test-directory }} | |
| rattler-bulk-build -t -m ${{ matrix.rattler-success }} tests/test_aux_files/integration/${{ matrix.test-directory }} --render-only |