mait: switch to normal ubuntu in tests #168
Workflow file for this run
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| # The starting point of this script are the links provided on the maturing doc: | |
| # * https://github.com/nanoporetech/fast-ctc-decode/blob/b226ea0f2b2f4f474eff47349703d57d2ea4801b/.github/workflows/publish.yml | |
| # * https://github.com/konstin/complex-manylinux-maturin-docker/blob/main/.github/workflows/build.yml | |
| # Description of the usage of virtual env: | |
| # * https://packaging.python.org/guides/installing-using-pip-and-virtual-environments/ | |
| name: test-cdshealpix | |
| on: [push, workflow_dispatch] | |
| # Jobs run in parallel, see https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#jobs | |
| # Github hosted runner are: see https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners | |
| jobs: | |
| test-ubuntu-wheels: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13'] | |
| steps: | |
| # Checkout the project | |
| - name: "Checkout branch" | |
| uses: actions/checkout@v4 | |
| # Test Rust code | |
| #- name: Run rust wrapper tests | |
| # run: cargo test --verbose -- --nocapture | |
| # Set up python, see https://docs.github.com/en/actions/guides/building-and-testing-python | |
| - name: "Set up Python ${{ matrix.python-version }} on ubuntu" | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Test python code | |
| - name: "Build and test wheel for Python ${{ matrix.python-version }} on ubuntu" | |
| run: | | |
| pip install virtualenv | |
| virtualenv cdshealpixenv | |
| source cdshealpixenv/bin/activate | |
| # Install and use maturin | |
| pip install --upgrade pip | |
| pip install maturin | |
| maturin -V | |
| maturin develop --release | |
| # Install dependencies | |
| pip install -r requirements-dev.txt | |
| # Run tests | |
| python -m pytest -v | |
| deactivate | |
| test-macos-wheels: | |
| runs-on: macos-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13'] | |
| steps: | |
| # Checkout the project | |
| - name: "Checkout branch" | |
| uses: actions/checkout@v4 | |
| # Test Rust code | |
| #- name: Run rust wrapper tests | |
| # run: cargo test --verbose -- --nocapture | |
| # Set up python, see https://docs.github.com/en/actions/guides/building-and-testing-python | |
| - name: "Set up Python ${{ matrix.python-version }} on MacOS" | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Test python code | |
| - name: "Build and test wheel for Python ${{ matrix.python-version }} on MacOS" | |
| run: | | |
| # Install, create and activate a python virtualenv | |
| rustup target add x86_64-apple-darwin | |
| pip install virtualenv | |
| virtualenv cdshealpixenv | |
| source cdshealpixenv/bin/activate | |
| # Install and use maturin | |
| pip install --upgrade pip | |
| pip install maturin | |
| maturin -V | |
| maturin build --release --target universal2-apple-darwin | |
| maturin develop --release | |
| # Install dependencies | |
| pip install -r requirements-dev.txt | |
| # Run tests | |
| python -m pytest -v | |
| deactivate | |
| test-windows-wheels: | |
| runs-on: windows-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12', '3.13'] | |
| steps: | |
| # Checkout the project | |
| - name: "Checkout branch" | |
| uses: actions/checkout@v4 | |
| # Test Rust code | |
| #- name: Run rust wrapper tests | |
| # run: cargo test --verbose -- --nocapture | |
| # Set up python, see https://docs.github.com/en/actions/guides/building-and-testing-python | |
| - name: "Set up Python ${{ matrix.python-version }} on Windows" | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Test python code | |
| - name: "Build and test wheel for Python ${{ matrix.python-version }} on Windows" | |
| run: | | |
| # Install, create and activate a python virtualenv | |
| # See: https://mothergeo-py.readthedocs.io/en/latest/development/how-to/venv-win.html | |
| pip install virtualenv | |
| virtualenv cdshealpixenv | |
| .\cdshealpixenv\Scripts\activate | |
| pip install --upgrade pip | |
| # Install and use maturin | |
| pip install maturin | |
| maturin -V | |
| maturin develop --release | |
| # Install dependencies | |
| pip install -r requirements-dev.txt | |
| # Run tests | |
| python -m pytest -v | |
| deactivate | |
| # Build the doc and run the tests in the doc (only for python 3.12 on ubuntu) | |
| test-doc: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: "Checkout branch" | |
| uses: actions/checkout@v4 | |
| - name: "Set up Python 3.12 on Ubuntu" | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.12' | |
| - name: "Build and test doc" | |
| run: | | |
| # Install virtualenv | |
| pip install virtualenv | |
| # Create and activate a new virtualenv | |
| virtualenv cdshealpixenv | |
| source cdshealpixenv/bin/activate | |
| # Install maturin | |
| pip install --upgrade pip | |
| pip install maturin | |
| sudo apt-get install pandoc | |
| maturin -V | |
| # Build and install cdshealpix | |
| maturin develop --release | |
| # Install dependencies needed to build the docs | |
| pip install -r requirements-doc.txt | |
| # Compile the docs and run the test examples | |
| cd ./docs | |
| # * Generate the HTML files | |
| make html | |
| # * Run the API test examples | |
| make doctest | |
| cd .. | |
| # Switch of the virtualenv | |
| deactivate | |