Code

Insert size filtering#214

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brentp merged 11 commits intobrentp:masterbrentp/mosdepth:masterfrom LudvigOlsen:length_filteringLudvigOlsen/mosdepth:length_filteringCopy head branch name to clipboardNov 11, 2023

+47-16

Commits

Commits on Nov 1, 2023

• Adds length filter in coverage

  

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  0f305c9

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• Adds min_len and max_len to CLI

  

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  08f186b

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• tries isize instead of tlen

  

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  6f8bc26

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• Passes min_len and max_len to coverage()

  

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  a6c030b

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• replaces template length with insert size in docs

  

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  a4a160f

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• Removes bad let

  

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  53ba593

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• replaces fragment length with insert size in docs

  

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  1bf2bbd

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Commits on Nov 2, 2023

• Sets min_len default to -1

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Commits on Nov 7, 2023

• Adheres to argument naming standard ("-" not "_")

  

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  5df473f

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Commits on Nov 9, 2023

• Updates argnames with "-frag-". Adds error when max < min.

  

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  39f73bd

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Commits on Nov 10, 2023

• Adds tests of fragment length filtering

  

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  4bd8f0c

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