upgrade general python dependencies (#1531)

.github/workflows/build.yml

@@ -44,7 +44,7 @@ jobs:
         run: git fetch --prune --unshallow
       - name: Install project Python dependencies
         run: |
-          pip install "wheel>=0.42.0, <0.43"
+          pip install "wheel>=0.45.1, <0.46"
           pip install -r requirements/local.txt
           pip install -r requirements/test.txt
       - name: Download icons

CHANGELOG.rst

@@ -34,6 +34,8 @@ Changed
 -------
 
 - **General**
+    - Upgrade minimum Django version to v4.2.18 (#1531)
+    - Upgrade general Python dependencies (#1531)
     - Use ``SODARAPI*`` API view base classes instead of ``CoreAPI*`` (#1401)
     - Declare app setting definitions as ``PluginAppSettingDef`` objects (#1456)
 - **Projectroles**

docs/source/conf.py

@@ -50,7 +50,7 @@
 # You can specify multiple suffix as a list of string:
 #
 # source_suffix = ['.rst', '.md']
-source_suffix = '.rst'
+source_suffix = {'.rst': 'restructuredtext'}
 
 # The master toctree document.
 master_doc = 'index'

docs/source/major_changes.rst

@@ -30,6 +30,16 @@ Release Highlights
 Breaking Changes
 ================
 
+System Prerequisites
+--------------------
+
+Django Version
+    The minimum Django version has been bumped to v4.2.18.
+General Python Dependencies
+    Third party Python package dependencies have been upgraded. See the
+    ``requirements`` directory for up-to-date package versions and upgrade your
+    project.
+
 Site Read-Only Mode
 -------------------
 

requirements/base.txt

@@ -1,48 +1,50 @@
 # Wheel
-wheel>=0.42.0, <0.43
+wheel>=0.45.1, <0.46
 
 # Setuptools
-setuptools>=70.0.0, <70.1
+setuptools>=75.8.0 , <75.9
 
 # Packaging
-packaging>=23.2, <24.0
+packaging>=24.2, <25.0
 
 # Django
-django>=4.2.17, <5.0
+django>=4.2.18, <5.0
 
 # Configuration
-django-environ>=0.11.2, <0.12
+django-environ>=0.12.0, <0.13
 
 # Forms
-django-crispy-forms>=2.1, <2.2
-crispy-bootstrap4==2024.1
+django-crispy-forms>=2.3, <2.4
+crispy-bootstrap4==2024.10
 
 # Models
-django-model-utils>=4.4.0, <4.5
+django-model-utils>=5.0.0, <5.1
 
 # Password storage
 argon2-cffi>=21.3.0, <21.4
 
 # Python-PostgreSQL Database Adapter
-psycopg2-binary>=2.9.9, <2.10
+psycopg2-binary>=2.9.10, <2.10
 
 # Unicode slugification
+# TODO: Remove or replace? See #1547
 awesome-slugify>=1.6.5, <1.7
 
 # Time zones support
-pytz>=2024.1
+pytz>=2024.2
 
 # SVG icon support
 django-iconify==0.3  # NOTE: v0.4 requires Python>=3.10
 
 # OpenID Connect (OIDC) authentication support
-social-auth-app-django>=5.4.0, <5.5
+social-auth-app-django>=5.4.2, <5.5
 
 # Online documentation via django-docs
-docutils==0.20.1
-Sphinx==7.2.6
+docutils==0.21.2
+# NOTE: Sphinx 8.0 requires Python 3.10+, Sphinx 8.2 requires 3.11+
+Sphinx==7.4.7
 django-docs==0.3.3
-sphinx-rtd-theme==2.0.0
+sphinx-rtd-theme==3.0.2
 
 # Versioning
 versioneer==0.29
@@ -55,7 +57,7 @@ versioneer==0.29
 django-plugins-bihealth>=0.5.2, <0.6
 
 # Rules for permissions
-rules>=3.3, <3.4
+rules>=3.5, <3.6
 
 # REST framework
 djangorestframework>=3.15.2, <3.16
@@ -67,19 +69,19 @@ drf-keyed-list-bihealth>=0.2.1, <0.3
 django-rest-knox>=4.2.0, <4.3
 
 # Markdown field support
-markdown==3.5.2
+markdown==3.7
 django-markupfield>=2.0.1, <2.1
 django-pagedown>=2.2.1, <2.3
-mistune>=3.0.2, <3.1
+mistune>=3.1.0, <3.2
 
 # Database file storage for filesfolders
 django-db-file-storage==0.5.6.1
 
 # Celery dependency
-redis>=5.0.2
+redis>=5.2.1
 
 # Backround Jobs requirements
-celery>=5.3.6, <5.4
+celery>=5.4.0, <5.5
 
 # Django autocomplete light (DAL)
 django-autocomplete-light==3.11.0

requirements/local.txt

@@ -2,14 +2,14 @@
 -r base.txt
 
 django-extensions==3.2.3
-Werkzeug>=3.0.1, <3.1
+Werkzeug>=3.1.3, <3.2
 
-django-debug-toolbar>=4.3.0, <4.4
+django-debug-toolbar>=5.0.1, <5.1
 
 # improved REPL
 ipdb>=0.13.13, <0.14
 
 # OpenAPI support
 inflection>=0.5.1, <0.6
-pyyaml>=6.0.1, <6.1
+pyyaml>=6.0.2, <6.1
 uritemplate>=4.1.1, <4.2

requirements/test.txt

@@ -1,14 +1,14 @@
 # Test dependencies go here.
 -r base.txt
 
-flake8==7.0.0
-django-test-plus==2.2.3
-factory-boy==3.3.0
+flake8==7.1.1
+django-test-plus==2.2.4
+factory-boy==3.3.1
 coverage==6.5.0  # NOTE: coveralls 3.3.1 requires <7.0
 django-coverage-plugin==3.1.0
 
 # pytest
-pytest-django==4.8.0
+pytest-django==4.9.0
 pytest-sugar==1.0.0
 
 # Selenium for UI testing
@@ -21,7 +21,7 @@ tblib==3.0.0
 beautifulsoup4==4.12.3
 
 # Black for formatting
-black==24.3.0
+black==24.10.0
 
 # Coveralls for coverage reporting
 coveralls==3.3.1

utility/install_python_dependencies.sh

@@ -22,7 +22,7 @@ if [ -z "$VIRTUAL_ENV" ]; then
     echo >&2 -e "\n"
     exit 1;
 else
-    pip install "wheel>=0.42.0, <0.43"
+    pip install "wheel>=0.45.1, <0.46"
     pip install -r $PROJECT_DIR/requirements/local.txt
     pip install -r $PROJECT_DIR/requirements/test.txt
     pip install -r $PROJECT_DIR/requirements.txt