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docs update
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@Yunuuuu
Yunuuuu committed Jan 9, 2025
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6 changes: 1 addition & 5 deletions README.Rmd
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Expand Up @@ -75,8 +75,6 @@ remotes::install_github("Yunuuuu/ggalign")

## Compare with other similar tools

Basic Layout support:

| Layout Options | `ggalign` | `ComplexHeatmap` | `marsilea` | `ggtree` |
| --------------------------------- | --------------------------------------------------- | --------------------------------- | ------------------------ | --------------------------------------------------- |
| **Language** | R | R | Python | R |
Expand All @@ -92,8 +90,6 @@ Basic Layout support:

-------------------------------------------------------------------------------

Specific Function:

| Functions | `ggalign` | `ComplexHeatmap` | `marsilea` | `ggtree` |
| -------------------------------------------- | ----------------------------------------------------- | ------------------------------------------------------------------------- | ----------------- | ----------------------------------- |
| **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended |
Expand All @@ -104,7 +100,7 @@ Specific Function:
| **Legends Creation** | Automatic | Limited automatic, requires manual add | Manual | Automatic |
| **Legends Position** | Anywhere, can be controlled for a single plot | Four sides, can only be placed on one side at a time | ? | Anywhere |
| **Scientific Color Palettes** | Many | Limited | Limited | Many |
| **Dendrogram** | Tree from Both `hclust` or `ape` | hclust only (Cannot be used in Stack Layout) | hclust only | Tree from Both `hclust` or `ape` |
| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only (Cannot be used in Stack Layout) | `hclust` only | Tree from Both `hclust` or `ape` |
| **Tanglegram** | ✅ | ❌ | ❌ | ❌ |
| **3D Heatmap** | ✅ | ✅ | ❌ | ❌ |
| **Oncoplot** | ✅ | ✅ | ✅ | ❌ |
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6 changes: 1 addition & 5 deletions README.md
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Expand Up @@ -68,8 +68,6 @@ remotes::install_github("Yunuuuu/ggalign")

## Compare with other similar tools

Basic Layout support:

| Layout Options | `ggalign` | `ComplexHeatmap` | `marsilea` | `ggtree` |
|-----------------------------------|-----------------------------------------------------|-----------------------------------|--------------------------|-----------------------------------------------------|
| **Language** | R | R | Python | R |
Expand All @@ -85,8 +83,6 @@ Basic Layout support:

------------------------------------------------------------------------

Specific Function:

| Functions | `ggalign` | `ComplexHeatmap` | `marsilea` | `ggtree` |
|----------------------------------------------|-------------------------------------------------------|---------------------------------------------------------------------------|-------------------|-------------------------------------|
| **Data input** | Various, and can be easily extended | fixed | fixed | Various, and can be easily extended |
Expand All @@ -97,7 +93,7 @@ Specific Function:
| **Legends Creation** | Automatic | Limited automatic, requires manual add | Manual | Automatic |
| **Legends Position** | Anywhere, can be controlled for a single plot | Four sides, can only be placed on one side at a time | ? | Anywhere |
| **Scientific Color Palettes** | Many | Limited | Limited | Many |
| **Dendrogram** | Tree from Both `hclust` or `ape` | hclust only (Cannot be used in Stack Layout) | hclust only | Tree from Both `hclust` or `ape` |
| **Dendrogram** | Tree from Both `hclust` or `ape` | `hclust` only (Cannot be used in Stack Layout) | `hclust` only | Tree from Both `hclust` or `ape` |
| **Tanglegram** | ✅ | ❌ | ❌ | ❌ |
| **3D Heatmap** | ✅ | ✅ | ❌ | ❌ |
| **Oncoplot** | ✅ | ✅ | ✅ | ❌ |
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