1.0.4

Fixed a bug with coverage and false discovery rate reporting (see issue #76)

1.0.3

Includes a new "-c" or "--show_counts" flag that reports copy number, #substitutions, #insertions, and #deletions for both JSON and TSV output.

1.0.2

• Small improvements to automatic window sizing (reducing memory needs for large model).
• The output from --mem will always show at the start of ULTRA's runtime.
• If ULTRA is built without release optimizations a warning will now be displayed at the top of the --help page.

Version 1.0.1

Basically no difference from version 1.0.0...

Version 1.0.0

First complete version of ULTRA! Yay!

Version 0.99.17

Initial GitHub release to coincide with the corresponding Docker container release. See the container on Docker Hub: https://hub.docker.com/repository/docker/traviswheelerlab/ultra.