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tyuhasbio5 authored Apr 2, 2024
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Expand Up @@ -9,15 +9,15 @@ Deep learning-based Identity Preserving Labeled-Object Multi-Animal Tracking.
DIPLOMAT provides algorithms and tools for performing multi-animal identity preserving tracking on top of single animal and multi animal CNN based tracking packages. Currently, it supports running on both DeepLabCut and SLEAP projects.
Unlike other multi-animal tracking packages, DIPLOMAT's algorithms work directly off confidence maps instead of running peak detection, allowing for more nuanced tracking results compared to other methods.

https://github.com/TravisWheelerLab/DIPLOMAT/assets/47544550/d805b673-4678-4297-b288-3fd08ad3cf62
[https://github.com/TravisWheelerLab/DIPLOMAT/assets/47544550/d805b673-4678-4297-b288-3fd08ad3cf62](https://private-user-images.githubusercontent.com/47544550/237458675-d805b673-4678-4297-b288-3fd08ad3cf62.mp4?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.C-HOqmEW44gEcMJF9So0LKcj1nQaQZORye3CHVnsMTE)

| | |
|------------------------------------------------------------|--------------------------------------------------|
| ![Example of tracking 2 Degus in a Box](docs/source/_static/imgs/example1.png) | ![Example of tracking 3 Rats](docs/source/_static/imgs/example2.png) |
| ![Example of tracking 2 Degus in a Box](https://raw.githubusercontent.com/TravisWheelerLab/DIPLOMAT/main/docs/source/_static/imgs/example1.png) | ![Example of tracking 3 Rats](https://raw.githubusercontent.com/TravisWheelerLab/DIPLOMAT/main/docs/source/_static/imgs/example2.png) |

DIPLOMAT also includes a UI for performing tracking and several other tools for storing and visualizing confidence maps.

![UI Demo Showing user correcting tracking in a video](docs/source/_static/imgs/UIDemo.png)
![UI Demo Showing user correcting tracking in a video](https://raw.githubusercontent.com/TravisWheelerLab/DIPLOMAT/main/docs/source/_static/imgs/UIDemo.png)

## Installation

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