894 Implement dynamic optimization#895

Merged

mknaranja merged 398 commits intoSciCompMod:mainfrom hannemann-tamas:main

May 17, 2024

+12,119-5,694

This pull request is big! We're only showing the most recent 250 commits

Commits on Oct 12, 2023

fix issue of missing temnplate parameter
Ralf Hannemann-Tamas
committed
fix issue of missing temnplate parameter
Ralf Hannemann-Tamas
committed
fix issue of missing temnplate parameter
Ralf Hannemann-Tamas
committed
fix issue of missing temnplate parameter
Ralf Hannemann-Tamas
committed
fix issue of missing temnplate parameter
Ralf Hannemann-Tamas
committed
fix issue of missing temnplate parameter
Ralf Hannemann-Tamas
committed

Commits on Oct 16, 2023

sync with upstream
Ralf Hannemann-Tamas
committed
Merge remote-tracking branch 'upstream/main'
Ralf Hannemann-Tamas
committed
Merge branch 'DLR-SC:main' into main
hannemann-tamas
authored
fix issue with check_constraints
Ralf Hannemann-Tamas
committed
progress in templatizing integrator
Ralf Hannemann-Tamas
committed

Commits on Oct 17, 2023

progress in templatizing integrators
Ralf Hannemann-Tamas
committed
some progress in templatizing integrators
Ralf Hannemann-Tamas
committed
some progress in templatizing integrators
Ralf Hannemann-Tamas
committed
compare algorithmic differentiation with finite differences
Ralf Hannemann-Tamas
committed

Commits on Oct 18, 2023

fix issue with clang-6.0 on CI machines
Ralf Hannemann-Tamas
committed

Commits on Oct 23, 2023

start creation of opttimization problem
Ralf Hannemann-Tamas
committed

Commits on Oct 24, 2023

some progress in TNLP
Ralf Hannemann-Tamas
committed

Commits on Oct 25, 2023

dynamic optimization of sEAIR works
Ralf Hannemann-Tamas
committed

Commits on Oct 26, 2023

change tolerance in consistencyStochasticMobility from 1e-8 to 1e-7
Ralf Hannemann-Tamas
committed

Commits on Oct 30, 2023

revert change from last submit
Ralf Hannemann-Tamas
committed
switch of memilio logging
Ralf Hannemann-Tamas
committed

Commits on Jan 15, 2024

work on merge conflicts
Ralf Hannemann-Tamas
committed
templatizing
Ralf Hannemann-Tamas
committed
add template paremeter FP to set_nodes()
Ralf Hannemann-Tamas
committed
templatizing advance and IntegratorCore
Ralf Hannemann-Tamas
committed
add template parameter FP to CompartmentModel
Ralf Hannemann-Tamas
committed
add template parameter FP
Ralf Hannemann-Tamas
committed

Commits on Jan 16, 2024

insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
insert template parameter FP and move function definitions into header
Ralf Hannemann-Tamas
committed
cleanup unused includes
Ralf Hannemann-Tamas
committed
Insert template parameter FP
Ralf Hannemann-Tamas
committed
insert FP as template parameter
Ralf Hannemann-Tamas
committed

Commits on Jan 18, 2024

add FP as template parameter
Ralf Hannemann-Tamas
committed

Commits on Jan 22, 2024

remove body (is already in header)
Ralf Hannemann-Tamas
committed
add template parameter FP
Ralf Hannemann-Tamas
committed
add FP as template parameter
Ralf Hannemann-Tamas
committed
improve doc
Ralf Hannemann-Tamas
committed
insert FP as template parameter for floating point types
Ralf Hannemann-Tamas
committed
insert FP as template parameter for floating point types
Ralf Hannemann-Tamas
committed
insert FP as template parameter for floating point types
Ralf Hannemann-Tamas
committed

Commits on Jan 24, 2024

fix issue with template parameter FP in mio::Populations
Ralf Hannemann-Tamas
committed
fix issue with call of get_flat_flow_index
Ralf Hannemann-Tamas
committed
fix issue with template parameter FP in mio::Populations
Ralf Hannemann-Tamas
committed
replace std::abs by std::fabs
Ralf Hannemann-Tamas
committed
set CMAKE_OSX_DEPLOYMENT_TARGET to avoid spurious linker warnings
Ralf Hannemann-Tamas
committed
Change return type of integrator::advance to use FP template parameter
Ralf Hannemann-Tamas
committed
fix issue with model.parameters.set()
Ralf Hannemann-Tamas
committed
do not include unused headers
Ralf Hannemann-Tamas
committed
fix issue with get_flat_flow_index
Ralf Hannemann-Tamas
committed
some progress in templatizing FP parameter
Ralf Hannemann-Tamas
committed

Commits on Jan 25, 2024

fix issue with missing template parameter FP
Ralf Hannemann-Tamas
committed
fix issue with template parameter FP
Ralf Hannemann-Tamas
committed
fix issue with template parameter FP
Ralf Hannemann-Tamas
committed
fix issue with template parameter FP
Ralf Hannemann-Tamas
committed
fix issue with template parameter FP
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
clenaup unsused includes
Ralf Hannemann-Tamas
committed
fix issues related to template parameter FP
Ralf Hannemann-Tamas
committed
fix issues related to template parameter FP
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
some progress in merge with upstream
Ralf Hannemann-Tamas
committed
some progress in merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed

Commits on Feb 1, 2024

fix issue with missing template parameter FP in rhs of is_compartment_model
Ralf Hannemann-Tamas
committed
fix issue with selection of correct overload of mio::oscecir::get_infections_relative()
Ralf Hannemann-Tamas
committed
fixx name resolution of Model in constructor of Simulation
Hannemann-Tamás
committed
fix issue with template instantiation related to template parameter FP
Ralf Hannemann-Tamas
committed

Commits on Feb 5, 2024

Merge remote-tracking branch 'upstream/main'
Ralf Hannemann-Tamas
committed
fix issue with template parameter FP
Ralf Hannemann-Tamas
committed
fix issue related to template paraameter FP
Ralf Hannemann-Tamas
committed
format
HenrZu
committed
link .clang-format into source directory (required by QtCreator)
Ralf Hannemann-Tamas
committed
add CMakeList.txt.user to be ignored
Ralf Hannemann-Tamas
committed

Commits on Feb 6, 2024

exclude .F-files (Fortran) from test coverage
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed

Commits on Feb 8, 2024

quick and dirty implmentation of output
Ralf Hannemann-Tamas
committed
cleanup unused parameters
Ralf Hannemann-Tamas
committed

Commits on Feb 15, 2024

cleanup unused parameters
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
increase tolerance of ASSERT_NEAR by a factor of 20 in ModelTestOdeSeir.compareWithPreviousRun to avoid spurious error on Apple Silicon
Ralf Hannemann-Tamas
committed
check for APPLE before setting CMAKE_OSX_DEPLOYMENT_TARGET
Ralf Hannemann-Tamas
committed
used ScalarType as default template parameter
Ralf Hannemann-Tamas
committed

Commits on Feb 19, 2024

add option MEMILIO_ENABLE_OPTIMIZATION, default OFF
Ralf Hannemann-Tamas
committed
apply clang-format
Ralf Hannemann-Tamas
committed
sync with upstream
Ralf Hannemann-Tamas
committed
use FP consistently as first template parameter
Ralf Hannemann-Tamas
committed
progress in recovering abm
Ralf Hannemann-Tamas
committed
make abm template free
Ralf Hannemann-Tamas
committed
Solve issues related to template parameter FP
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed
fix issues related to template parameter FP
Ralf Hannemann-Tamas
committed

Commits on Feb 20, 2024

fix issues with missing template parameter
Ralf Hannemann-Tamas
committed
remove exclude Fortran files from code coverage to test CI machines
Ralf Hannemann-Tamas
committed
remove exclude Fortran files from code coverage to test CI machines
Ralf Hannemann-Tamas
committed
Exclude Fortran files from code coverage to test CI machines
Ralf Hannemann-Tamas
committed
rename SEIAR related examples
Ralf Hannemann-Tamas
committed
Enable optimization on Linux by default
Ralf Hannemann-Tamas
committed
adapt copyright and comments
Ralf Hannemann-Tamas
committed
MEMILIO_ENABLE_OPTIMIZATION is OFF by default
Ralf Hannemann-Tamas
committed
Clenaup unused header file ad.hpp
Ralf Hannemann-Tamas
committed
remove code the was commented out
Ralf Hannemann-Tamas
committed
correct type in doxygen comment
Ralf Hannemann-Tamas
committed

Commits on Feb 26, 2024

Merge remote-tracking branch 'upstream/main'
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed
ScalarType default for template parameter FP
Ralf Hannemann-Tamas
committed
comments and renaming
Ralf Hannemann-Tamas
committed
renaming
Ralf Hannemann-Tamas
committed
add some comments
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed
improve readability
Ralf Hannemann-Tamas
committed
improve readability
Ralf Hannemann-Tamas
committed

Commits on Feb 27, 2024

Merge remote-tracking branch 'upstream/main'
Ralf Hannemann-Tamas
committed

Commits on Feb 28, 2024

cleanup
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed
cleanup
Ralf Hannemann-Tamas
committed
rm build-
Ralf Hannemann-Tamas
committed
add comment
Ralf Hannemann-Tamas
committed

Commits on Mar 6, 2024

merge with upstream
Ralf Hannemann-Tamas
committed

Commits on Mar 14, 2024

towards testing
Ralf Hannemann-Tamas
committed
cleanup time_series_to_file.h
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
add missing template argument
Ralf Hannemann-Tamas
committed

Commits on Mar 18, 2024

merge with upstream
Ralf Hannemann-Tamas
committed
Merge remote-tracking branch 'upstream/main'
Ralf Hannemann-Tamas
committed

Commits on Mar 20, 2024

Merge remote-tracking branch 'upstream/main'
Ralf Hannemann-Tamas
committed

Commits on Mar 27, 2024

merge with upstream
Ralf Hannemann-Tamas
committed

Commits on Apr 3, 2024

merge with upstream
Ralf Hannemann-Tamas
committed
merge with upstream
Ralf Hannemann-Tamas
committed
consistently use ScalarType in SDE models
reneSchm
committed

Commits on Apr 5, 2024

add a "Vector" template alias
reneSchm
committed
merge with upstream
Ralf Hannemann-Tamas
committed
move arguments for template ControlledStepper
reneSchm
committed
add is_fsal_stepper back
reneSchm
committed

Commits on Apr 8, 2024

prepare and add test
Ralf Hannemann-Tamas
committed
fix issue with python bindings
Ralf Hannemann-Tamas
committed

Commits on Apr 19, 2024

Commits on Apr 26, 2024

towards fixing pycode/memilio-generation
Ralf Hannemann-Tamas
committed
run pre-commit
reneSchm
committed
include adapt_rk.h
Ralf Hannemann-Tamas
committed
add whitespace to fix tests
reneSchm
committed
cleanup
Ralf Hannemann-Tamas
committed
exclude ad lib from code coverage
mknaranja
committed

Commits on May 2, 2024

improve and update doc
Ralf Hannemann-Tamas
committed
improve comments
Ralf Hannemann-Tamas
committed
use FP instead of double in EulerStep
Ralf Hannemann-Tamas
committed
remove usage of ad::value()
Ralf Hannemann-Tamas
committed
use mio::RKIntegratorCore<> instead of mio::RKIntegratorCore<double>
Ralf Hannemann-Tamas
committed
cleanup double comment
Ralf Hannemann-Tamas
committed
Eliminate FP und use default template argument instead
Ralf Hannemann-Tamas
committed
corrected path to exclude ad from codecov
lenaploetzke
committed
Merge remote-tracking branch 'scicompmod/main'
reneSchm
committed
post merge cleanup. includes, comments, formatting
reneSchm
committed
Merge branch 'main' of github.com:hannemann-tamas/memilio-rh
reneSchm
committed
mark two more args as unused (used only in assert)
reneSchm
committed
remove unused save_result_result
reneSchm
committed

Commits on May 3, 2024

include spdlog through logging.h
reneSchm
committed
do not overwrite moving average

reneSchm
and
mknaranja
authored
tests odeseair
HenrZu
committed
fix ad::value(a1_y)
Ralf Hannemann-Tamas
committed
remove OSX_DEPLOYMENT_TARGET statement
Ralf Hannemann-Tamas
committed
added test for ad
lenaploetzke
committed
disabled warning no longer necessary
lenaploetzke
committed

Commits on May 6, 2024

Commits on May 12, 2024

some comments
hannemann-tamas
committed

Commits on May 13, 2024

Commits on May 14, 2024

[ci skip] directly use base in constructor benchmark
HenrZu
committed

Commits on May 15, 2024

Apply suggestions from code review

lenaploetzke
and
reneSchm
authored

Commits on May 17, 2024

Merge remote-tracking branch 'scicompmod/main'
reneSchm
committed