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Corrections/Extension to Phenotypic SNP annotations #10

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TCLamnidis opened this issue Nov 1, 2023 · 1 comment
Open

Corrections/Extension to Phenotypic SNP annotations #10

TCLamnidis opened this issue Nov 1, 2023 · 1 comment

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@TCLamnidis
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  • rs4959270: According to SNPedia, C allele "associated with black hair color [PMID 21197618]". Instead in annotation the A allele is marked as "lighter skin/hair". Should flip allele and update description for consistency.
  • rs1393350: Effect and non-effect allele are likely inverted. SNPedia
  • rs16891982 & rs28777: Check what is what. This paper mentions rs28777 with the alleles of rs16891982 🤔
  • Look through Iceman paper SNP list to maybe add some more SNPs to the annotation file
@TCLamnidis TCLamnidis changed the title Corrections to Phenotypic SNP annotations Corrections/Extension to Phenotypic SNP annotations Nov 1, 2023
@TCLamnidis
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TCLamnidis commented Feb 13, 2024 •
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566dfff Fixed rs4959270 & rs1393350

@TCLamnidis TCLamnidis mentioned this issue Sep 2, 2024
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