Continuous integration and deployment #94
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| name: Continuous integration and deployment | |
| on: | |
| push: | |
| schedule: | |
| - cron: '0 0 * * 0' # weekly | |
| workflow_dispatch: | |
| jobs: | |
| testExamples: | |
| name: Test example SED-ML files (in COMBINE archives) | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 1 | |
| - name: Install Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.9' | |
| - name: Setup pip cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: /opt/hostedtoolcache/Python | |
| key: ${{ runner.os }}-pip-${{ hashFiles('site_creator/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install pip and setuptools | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade setuptools | |
| - name: Install requirements | |
| run: python -m pip install -r tests/requirements.txt | |
| - name: Compile example COMBINE archives | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y --no-install-recommends zipcmp | |
| python scripts/compile_examples_combine_archives.py | |
| - name: Test examples | |
| run: python -m pytest tests/ | |
| compileStaticWebsite: | |
| name: Compile static website | |
| if: "!contains(github.event.head_commit.message, '[skip ci]')" | |
| needs: testExamples | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 1 | |
| - name: Install Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.9' | |
| - name: Setup pip cache | |
| uses: actions/cache@v2 | |
| with: | |
| path: /opt/hostedtoolcache/Python | |
| key: ${{ runner.os }}-pip-${{ hashFiles('site_creator/requirements.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install pip and setuptools | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install --upgrade setuptools | |
| - name: Install requirements | |
| working-directory: site_creator | |
| run: python -m pip install -r requirements.txt | |
| - name: Setup Git | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "SED-ML Bot" | |
| git config pull.rebase false | |
| - name: Compile website | |
| working-directory: site_creator | |
| run: python create_static_html.py | |
| - id: commit-compiled-website | |
| name: Commit changes to the compiled web pages | |
| run: | | |
| git stash | |
| git pull | |
| set +e | |
| git stash pop | |
| git add *.html | |
| git commit -m "Updated compiled files for website [skip ci]" | |
| if [[ $? = 0 ]]; then | |
| websiteChanged=1 | |
| else | |
| websiteChanged=0 | |
| fi | |
| echo "::set-output name=websiteChanged::$websiteChanged" | |
| - name: Compile example COMBINE archives | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install -y --no-install-recommends zipcmp | |
| python scripts/compile_examples_combine_archives.py | |
| - id: commit-example-combine-archives | |
| name: Commit compiled example COMBINE archives | |
| run: | | |
| git stash | |
| git pull | |
| set +e | |
| git stash pop | |
| git add examples/*.omex | |
| git commit -m "Updated example COMBINE archives [skip ci]" | |
| if [[ $? = 0 ]]; then | |
| examplesChanged=1 | |
| else | |
| examplesChanged=0 | |
| fi | |
| echo "::set-output name=examplesChanged::$examplesChanged" | |
| - name: Bundle examples | |
| id: bundle-examples | |
| working-directory: examples/L1V3 | |
| run: | | |
| zip SED-ML_L1V3_examples-new.zip *.omex | |
| zipcmp SED-ML_L1V3_examples.zip SED-ML_L1V3_examples-new.zip | |
| if [[ $? = 0 ]]; then | |
| changed=0 | |
| rm SED-ML_L1V3_examples-new.zip | |
| else | |
| changed=1 | |
| mv SED-ML_L1V3_examples-new.zip SED-ML_L1V3_examples.zip | |
| fi | |
| echo "::set-output name=changed::$changed" | |
| - id: commit-bundled-examples | |
| if: steps.bundle-examples.outputs.changed == '1' | |
| name: Commit changes to the bundled examples | |
| working-directory: examples/L1V3 | |
| run: | | |
| git stash | |
| git pull | |
| set +e | |
| git stash pop | |
| git add SED-ML_L1V3_examples.zip | |
| git commit -m "Updated bundle of example files [skip ci]" | |
| - name: Determine branch to push compiled website to | |
| id: get-push-branch | |
| run: | | |
| if [ "${{ github.ref }}" == "refs/heads/master" ]; then | |
| echo "::set-output name=branch::ci-compiled-website" | |
| else | |
| echo "::set-output name=branch::${{ github.ref }}" | |
| fi | |
| - name: Push the changes to the compiled website | |
| if: steps.commit-compiled-website.outputs.websiteChanged == '1' || steps.commit-example-combine-archives.outputs.examplesChanged == '1' || steps.bundle-examples.outputs.changed == '1' | |
| uses: ad-m/github-push-action@master | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| branch: ${{ steps.get-push-branch.outputs.branch }} | |
| force: ${{ steps.get-push-branch.outputs.branch == 'ci-compiled-website' }} | |
| - name: Create pull request | |
| if: steps.get-push-branch.outputs.branch == 'ci-compiled-website' | |
| uses: peter-evans/create-pull-request@v3 | |
| with: | |
| branch: ${{ steps.get-push-branch.outputs.branch }} |