Skip to content

Commit

Permalink
Update test data (really the last time now)
Browse files Browse the repository at this point in the history
  • Loading branch information
milanmlft committed Aug 23, 2024
1 parent ba89fbe commit c797006
Show file tree
Hide file tree
Showing 6 changed files with 52 additions and 52 deletions.
8 changes: 4 additions & 4 deletions inst/test_data/calypso_concepts.csv
Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
concept_id,concept_name,vocabulary_id,domain_id,concept_class_id,standard_concept,concept_code
3001079,Blood group antibody screen [Presence] in Serum or Plasma,LOINC,Measurement,Lab Test,S,890-4
4108450,Inspiration/expiration time ratio,SNOMED,Measurement,Observable Entity,S,250822000
4128111,T - Tumor stage,SNOMED,Observation,Attribute,S,260878002
4248525,Lying systolic blood pressure,SNOMED,Measurement,Observable Entity,S,407556006
4353713,Positive end expiratory pressure,SNOMED,Observation,Observable Entity,S,250854009
4353717,Ventilator delivered minute volume,SNOMED,Observation,Observable Entity,S,250875001
4354252,Non-invasive systolic arterial pressure,SNOMED,Measurement,Observable Entity,S,251070002
4353843,Invasive systolic arterial pressure,SNOMED,Measurement,Observable Entity,S,251071003
4128111,T - Tumor stage,SNOMED,Observation,Attribute,S,260878002
3001079,Blood group antibody screen [Presence] in Serum or Plasma,LOINC,Measurement,Lab Test,S,890-4
4248525,Lying systolic blood pressure,SNOMED,Measurement,Observable Entity,S,407556006
4354252,Non-invasive systolic arterial pressure,SNOMED,Measurement,Observable Entity,S,251070002
45766147,Appearance,SNOMED,Observation,Observable Entity,S,703248002
28 changes: 14 additions & 14 deletions inst/test_data/calypso_monthly_counts.csv
Original file line number Diff line number Diff line change
@@ -1,23 +1,23 @@
concept_id,concept_name,date_year,date_month,person_count,records_per_person
3001079,Blood group antibody screen [Presence] in Serum or Plasma,2020,5,1,1
4108450,Inspiration/expiration time ratio,2019,9,1,1
4128111,T - Tumor stage,2020,11,1,1
4128111,T - Tumor stage,2020,12,1,1
4248525,Lying systolic blood pressure,2019,5,1,1
4248525,Lying systolic blood pressure,2019,10,1,1
4248525,Lying systolic blood pressure,2020,6,1,1
4354252,Non-invasive systolic arterial pressure,2019,8,1,1
4248525,Lying systolic blood pressure,2021,10,1,1
4353843,Invasive systolic arterial pressure,2023,4,1,1
4128111,T - Tumor stage,2020,11,1,1
4353713,Positive end expiratory pressure,2019,2,1,1
4353713,Positive end expiratory pressure,2021,7,1,1
4353717,Ventilator delivered minute volume,2021,5,1,1
4353717,Ventilator delivered minute volume,2022,12,1,1
4353843,Invasive systolic arterial pressure,2021,9,1,1
4353843,Invasive systolic arterial pressure,2021,10,1,1
3001079,Blood group antibody screen [Presence] in Serum or Plasma,2020,5,1,1
4354252,Non-invasive systolic arterial pressure,2021,11,1,1
4353843,Invasive systolic arterial pressure,2021,12,1,1
4354252,Non-invasive systolic arterial pressure,2021,6,1,1
4108450,Inspiration/expiration time ratio,2019,9,1,1
4353843,Invasive systolic arterial pressure,2023,4,1,1
4354252,Non-invasive systolic arterial pressure,2019,8,1,1
4354252,Non-invasive systolic arterial pressure,2020,8,1,1
4248525,Lying systolic blood pressure,2019,5,1,1
4353843,Invasive systolic arterial pressure,2021,9,1,1
4128111,T - Tumor stage,2020,12,1,1
4354252,Non-invasive systolic arterial pressure,2021,2,1,1
4354252,Non-invasive systolic arterial pressure,2021,6,1,1
4354252,Non-invasive systolic arterial pressure,2021,11,1,1
45766147,Appearance,2022,6,1,1
4353717,Ventilator delivered minute volume,2021,5,1,1
4353713,Positive end expiratory pressure,2019,2,1,1
4353717,Ventilator delivered minute volume,2022,12,1,1
4353713,Positive end expiratory pressure,2021,7,1,1
16 changes: 8 additions & 8 deletions inst/test_data/calypso_summary_stats.csv
Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
concept_id,concept_name,summary_attribute,value_as_number,value_as_string
4248525,Lying systolic blood pressure,mean,132.8,NA
4354252,Non-invasive systolic arterial pressure,mean,123.66666666666667,NA
3001079,Blood group antibody screen [Presence] in Serum or Plasma,frequency,2,Not present
4108450,Inspiration/expiration time ratio,mean,0.6666666666666666,NA
4353843,Invasive systolic arterial pressure,mean,128.83333333333334,NA
4353843,Invasive systolic arterial pressure,sd,23.65938855225694,NA
4354252,Non-invasive systolic arterial pressure,sd,9.993331109628395,NA
4248525,Lying systolic blood pressure,sd,21.25323504786977,NA
4108450,Inspiration/expiration time ratio,sd,0,NA
4128111,T - Tumor stage,frequency,1,NA
3001079,Blood group antibody screen [Presence] in Serum or Plasma,frequency,2,Not present
4128111,T - Tumor stage,frequency,1,NA
4353717,Ventilator delivered minute volume,mean,12.799999999999999,NA
4248525,Lying systolic blood pressure,mean,132.8,NA
4248525,Lying systolic blood pressure,sd,21.25323504786977,NA
4353713,Positive end expiratory pressure,mean,5.666666666666667,NA
4353713,Positive end expiratory pressure,sd,1.1547005383792517,NA
4353717,Ventilator delivered minute volume,mean,12.799999999999999,NA
4353717,Ventilator delivered minute volume,sd,3.469870314579495,NA
4353843,Invasive systolic arterial pressure,mean,128.83333333333334,NA
4353843,Invasive systolic arterial pressure,sd,23.65938855225694,NA
4354252,Non-invasive systolic arterial pressure,mean,123.66666666666667,NA
4354252,Non-invasive systolic arterial pressure,sd,9.993331109628395,NA
45766147,Appearance,frequency,1,Well nourished
8 changes: 4 additions & 4 deletions tests/testthat/_snaps/utils_get_data/concepts_table.csv
Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
concept_id,concept_name,vocabulary_id,domain_id,concept_class_id,standard_concept,concept_code
3001079,Blood group antibody screen [Presence] in Serum or Plasma,LOINC,Measurement,Lab Test,S,890-4
4108450,Inspiration/expiration time ratio,SNOMED,Measurement,Observable Entity,S,250822000
4128111,T - Tumor stage,SNOMED,Observation,Attribute,S,260878002
4248525,Lying systolic blood pressure,SNOMED,Measurement,Observable Entity,S,407556006
4353713,Positive end expiratory pressure,SNOMED,Observation,Observable Entity,S,250854009
4353717,Ventilator delivered minute volume,SNOMED,Observation,Observable Entity,S,250875001
4354252,Non-invasive systolic arterial pressure,SNOMED,Measurement,Observable Entity,S,251070002
4353843,Invasive systolic arterial pressure,SNOMED,Measurement,Observable Entity,S,251071003
4128111,T - Tumor stage,SNOMED,Observation,Attribute,S,260878002
3001079,Blood group antibody screen [Presence] in Serum or Plasma,LOINC,Measurement,Lab Test,S,890-4
4248525,Lying systolic blood pressure,SNOMED,Measurement,Observable Entity,S,407556006
4354252,Non-invasive systolic arterial pressure,SNOMED,Measurement,Observable Entity,S,251070002
45766147,Appearance,SNOMED,Observation,Observable Entity,S,703248002
28 changes: 14 additions & 14 deletions tests/testthat/_snaps/utils_get_data/monthly_counts.csv
Original file line number Diff line number Diff line change
@@ -1,23 +1,23 @@
concept_id,concept_name,date_year,date_month,person_count,records_per_person
3001079,Blood group antibody screen [Presence] in Serum or Plasma,2020,5,1,1
4108450,Inspiration/expiration time ratio,2019,9,1,1
4128111,T - Tumor stage,2020,11,1,1
4128111,T - Tumor stage,2020,12,1,1
4248525,Lying systolic blood pressure,2019,5,1,1
4248525,Lying systolic blood pressure,2019,10,1,1
4248525,Lying systolic blood pressure,2020,6,1,1
4354252,Non-invasive systolic arterial pressure,2019,8,1,1
4248525,Lying systolic blood pressure,2021,10,1,1
4353843,Invasive systolic arterial pressure,2023,4,1,1
4128111,T - Tumor stage,2020,11,1,1
4353713,Positive end expiratory pressure,2019,2,1,1
4353713,Positive end expiratory pressure,2021,7,1,1
4353717,Ventilator delivered minute volume,2021,5,1,1
4353717,Ventilator delivered minute volume,2022,12,1,1
4353843,Invasive systolic arterial pressure,2021,9,1,1
4353843,Invasive systolic arterial pressure,2021,10,1,1
3001079,Blood group antibody screen [Presence] in Serum or Plasma,2020,5,1,1
4354252,Non-invasive systolic arterial pressure,2021,11,1,1
4353843,Invasive systolic arterial pressure,2021,12,1,1
4354252,Non-invasive systolic arterial pressure,2021,6,1,1
4108450,Inspiration/expiration time ratio,2019,9,1,1
4353843,Invasive systolic arterial pressure,2023,4,1,1
4354252,Non-invasive systolic arterial pressure,2019,8,1,1
4354252,Non-invasive systolic arterial pressure,2020,8,1,1
4248525,Lying systolic blood pressure,2019,5,1,1
4353843,Invasive systolic arterial pressure,2021,9,1,1
4128111,T - Tumor stage,2020,12,1,1
4354252,Non-invasive systolic arterial pressure,2021,2,1,1
4354252,Non-invasive systolic arterial pressure,2021,6,1,1
4354252,Non-invasive systolic arterial pressure,2021,11,1,1
45766147,Appearance,2022,6,1,1
4353717,Ventilator delivered minute volume,2021,5,1,1
4353713,Positive end expiratory pressure,2019,2,1,1
4353717,Ventilator delivered minute volume,2022,12,1,1
4353713,Positive end expiratory pressure,2021,7,1,1
16 changes: 8 additions & 8 deletions tests/testthat/_snaps/utils_get_data/summary_stats.csv
Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
concept_id,concept_name,summary_attribute,value_as_number,value_as_string
4248525,Lying systolic blood pressure,mean,132.8,NA
4354252,Non-invasive systolic arterial pressure,mean,123.66666666666669,NA
3001079,Blood group antibody screen [Presence] in Serum or Plasma,frequency,2,Not present
4108450,Inspiration/expiration time ratio,mean,0.6666666666666666,NA
4353843,Invasive systolic arterial pressure,mean,128.83333333333334,NA
4353843,Invasive systolic arterial pressure,sd,23.65938855225694,NA
4354252,Non-invasive systolic arterial pressure,sd,9.993331109628397,NA
4248525,Lying systolic blood pressure,sd,21.25323504786977,NA
4108450,Inspiration/expiration time ratio,sd,0,NA
4128111,T - Tumor stage,frequency,1,NA
3001079,Blood group antibody screen [Presence] in Serum or Plasma,frequency,2,Not present
4128111,T - Tumor stage,frequency,1,NA
4353717,Ventilator delivered minute volume,mean,12.8,NA
4248525,Lying systolic blood pressure,mean,132.8,NA
4248525,Lying systolic blood pressure,sd,21.25323504786977,NA
4353713,Positive end expiratory pressure,mean,5.666666666666667,NA
4353713,Positive end expiratory pressure,sd,1.1547005383792517,NA
4353717,Ventilator delivered minute volume,mean,12.8,NA
4353717,Ventilator delivered minute volume,sd,3.469870314579495,NA
4353843,Invasive systolic arterial pressure,mean,128.83333333333334,NA
4353843,Invasive systolic arterial pressure,sd,23.65938855225694,NA
4354252,Non-invasive systolic arterial pressure,mean,123.66666666666669,NA
4354252,Non-invasive systolic arterial pressure,sd,9.993331109628397,NA
45766147,Appearance,frequency,1,Well nourished

0 comments on commit c797006

Please sign in to comment.