Rename references to old github organisation (#43)

.github/ISSUE_TEMPLATE/story.yml

@@ -1,6 +1,6 @@
 name: New story
 description: Create a new story or task
-# projects: [ "UCLH-Foundry/13" ]
+# projects: [ "SAFEHR-data/13" ]
 body:
   - type: markdown
     attributes:

R/app_server.R

@@ -17,7 +17,7 @@ app_server <- function(input, output, session) {
   selected_dates <- mod_date_range_server("date_range")
 
   # TODO: refactor monthly_count and summary_stat modules into a single module?n
-  # https://github.com/UCLH-Foundry/omop-data-catalogue/issues/30
+  # https://github.com/SAFEHR-data/omop-data-catalogue/issues/30
   mod_monthly_count_server("monthly_count", monthly_counts, selected_row, selected_dates)
   mod_summary_stat_server("summary_stat", summary_stats, selected_row)
 

README.md

@@ -2,7 +2,7 @@
 
 <!-- badges: start -->
 [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
-[![R-CMD-check](https://github.com/UCLH-Foundry/omop-data-catalogue/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/UCLH-Foundry/omop-data-catalogue/actions/workflows/R-CMD-check.yaml)
+[![R-CMD-check](https://github.com/SAFEHR-data/omop-data-catalogue/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/SAFEHR-data/omop-data-catalogue/actions/workflows/R-CMD-check.yaml)
 <!-- badges: end -->
 
 The goal of calypso is to provide a summary of OMOP data and display it in a public data catalogue
@@ -13,7 +13,7 @@ You can install the development version of calypso from within R like so:
 
 ```r
 # install.packages("pak")
-pak::pak("UCLH-Foundry/calypso")
+pak::pak("SAFEHR-data/calypso")
 ```
 
 ## Development
@@ -26,7 +26,7 @@ as it has good support for R package development and Shiny.
 
 1. Clone this repository
 
-    - Either with `git clone [email protected]:UCLH-Foundry/omop-data-catalogue.git`
+    - Either with `git clone [email protected]:SAFEHR-data/omop-data-catalogue.git`
     - Or by creating [a new project in RStudio from version control](https://docs.posit.co/ide/user/ide/guide/tools/version-control.html#creating-a-new-project-based-on-a-remote-git-or-subversion-repository)
 
 2. Install [`{renv}`](https://rstudio.github.io/renv/index.html) and restore the project library by running the following from an R console in the project directory:
@@ -35,7 +35,7 @@ as it has good support for R package development and Shiny.
     install.packages("renv")
     renv::restore()
     ```
-3. Create the [duckdb](https://github.com/duckdb/duckdb) test database and run the analyses by running from an R console in the project directory (test dataset properties can be updated in the [`.Rprofile`](https://github.com/UCLH-Foundry/omop-data-catalogue/blob/main/.Rprofile) file):
+3. Create the [duckdb](https://github.com/duckdb/duckdb) test database and run the analyses by running from an R console in the project directory (test dataset properties can be updated in the [`.Rprofile`](https://github.com/SAFEHR-data/omop-data-catalogue/blob/main/.Rprofile) file):
 
     ```r
     source(here::here("dev/test_db/setup_test_db.R"))
@@ -50,7 +50,7 @@ as it has good support for R package development and Shiny.
 
 The `dev/02_dev.R` script contains a few helper functions to get you started.
 
-Calypso test data can be found in [`inst/test_data`](https://github.com/UCLH-Foundry/omop-data-catalogue/tree/main/inst/data). These data have been generated by using the synthetic dataset '[synthea-allergies-10k](https://darwin-eu.github.io/CDMConnector/reference/eunomiaDir.html)', and adding some [dummy data](https://github.com/UCLH-Foundry/omop-data-catalogue/tree/main/dev/test_db/dummy) for the MEASUREMENT and OBSERVATION tables (to have some records in the 'calypso-summary-stats' table).
+Calypso test data can be found in [`inst/test_data`](https://github.com/SAFEHR-data/omop-data-catalogue/tree/main/inst/data). These data have been generated by using the synthetic dataset '[synthea-allergies-10k](https://darwin-eu.github.io/CDMConnector/reference/eunomiaDir.html)', and adding some [dummy data](https://github.com/SAFEHR-data/omop-data-catalogue/tree/main/dev/test_db/dummy) for the MEASUREMENT and OBSERVATION tables (to have some records in the 'calypso-summary-stats' table).
 
 If you want to recreate a test dataset, you can run the following R scripts: