Time-lapse microscopy and simulation tracking using entropy and mutual information.
Requires:
- numpy
- scipy
- matplotlib
Jupyter required for notebook based data exploration and plotting.
conda create -n infotracking python=3.6 numpy scipy scikit-image matplotlib jupyter
source activate infotracking
conda install -c conda-forge opencv
python EM.py <filename_pattern> <start_frame> <number_frames>
where <filename_pattern> is a format string with full path, e.g. /Users/tim/data/image%03d.tif.