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@tpereachamblee tpereachamblee released this 27 Jan 23:33
· 65 commits to master since this release
v0.4.0
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Learn about vigilant mode.

Added

  • arcasHLA customize and arcasHLA quant modules added along with necessary reference files, providing new functionality for quantifying HLA allele-specific expression (per our publications). This functionality has been merged from the orginal arcasHLA-quant repository.

Changed

  • arcasHLA now requires the latest version of Git Large File Storage to download this repository due to the large size of reference FASTA files.
  • Both arcasHLA customize and arcasHLA quant updated to use JSON reference files instead of Python's binary pickle format.

Fixed

  • arcasHLA quant now uses appropriate defaults for fragment length and standard deviation when run on single-end reads.
  • arcasHLA customize now works from outside of the arcasHLA directory.
  • arcasHLA merge properly processes JSON output files.
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