v0.1.0
Added
- Random names for temp folders.
- Required versions for dependencies in
README.md
.
Changed
- Stderr output from system calls (e.g.
samtools sort
) piped to log. - Modifications so arcasHLA can be run from any location (Pull Request #2).
- Merged shared alignment scripts for
genotype
andextract
intoalign.py
. - Modified architecture of
aligment.p
files to support merged scripts (still compatible with v0.0alignment.p
files).
Fixed
- Genotype compatibility with
.fastq.gz
and.fastq
files (Issue: Fastq as input #7). - Catch corrupted or empty
hla.dat
files (Issue: Error in ./arcasHLA reference #4).