fixed single vs paired for quant

RabadanLab · Feb 22, 2022 · a2036a2 · a2036a2
1 parent 4828a47
commit a2036a2
Showing 1 changed file with 1 addition and 5 deletions.
diff --git a/scripts/quant.py b/scripts/quant.py
@@ -148,11 +148,7 @@ def arg_check_files(parser, arg):
 
     args = parser.parse_args()
 
-    paired = False
-    if len(args.file) == 0:
-        sys.exit('[genotype] Error: FASTQ required')
-    elif len(args.file) == 2:
-        paired = True
+    paired = not args.single
 
     if args.sample == None:
         sample = os.path.basename(args.file[0]).split('.')[0]