Merge pull request #393 from PrincetonUniversity/issue-389

Generate required files for examples/Tromp2005 from CMake

examples/Tromp_2005/.gitignore

@@ -3,9 +3,6 @@ OUTPUT_FILES/*
 *.semd
 *.adj
 Par_File
-Snakefile
 *.pyc
-forward_source.yaml
 forward_config.yaml
-adjoint_source.yaml
 adjoint_config.yaml

examples/Tromp_2005/templates/specfem_config.yaml → examples/Tromp_2005/CMakeFiles/adjoint_config.yaml.in

@@ -1,7 +1,10 @@
 parameters:
 
+  databases:
+    mesh-database: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/OUTPUT_FILES/database.bin"
+    source-file: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/adjoint_source.yaml"
+
   header:
-    title: "Tromp-Tape-Liu (GJI 2005)"
     description: |
       Material systems : Elastic domain (1)
       Interfaces : None
@@ -12,29 +15,39 @@ parameters:
       Output : Wavefield at the last time step (1)
       Output : Seismograms in ASCII format (1)
 
+    title: Tromp-Tape-Liu (GJI 2005)
+
+  receivers:
+    angle: 0.0
+    nstep_between_samples: 1
+    seismogram-type:
+    - displacement
+    stations-file: placeholder/for/path/to/STATIONS
+
+  run-setup:
+    number-of-processors: 1
+    number-of-runs: 1
+
   simulation-setup:
     quadrature:
       quadrature-type: GLL4
 
+    simulation-mode:
+      combined:
+        reader:
+          wavefield:
+            directory: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/OUTPUT_FILES"
+            format: HDF5
+
+        writer:
+          kernels:
+            directory: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/OUTPUT_FILES"
+            format: ASCII
+
     solver:
       time-marching:
         time-scheme:
-          type: Newmark
           dt: 0.02
           nstep: 2004
           t0: 8.0
-
-  receivers:
-    stations-file: placeholder/for/path/to/STATIONS
-    angle: 0.0
-    seismogram-type:
-      - displacement
-    nstep_between_samples: 1
-
-  run-setup:
-    number-of-processors: 1
-    number-of-runs: 1
-
-  databases:
-    mesh-database: placeholder/for/path/to/database.bin
-    source-file: placeholder/for/path/to/source.yaml
+          type: Newmark

examples/Tromp_2005/CMakeFiles/forward_config.yaml.in

@@ -0,0 +1,51 @@
+parameters:
+
+  databases:
+    mesh-database: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/OUTPUT_FILES/database.bin"
+    source-file: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/forward_source.yaml"
+
+  header:
+    description: |
+      Material systems : Elastic domain (1)
+      Interfaces : None
+      Sources : Force source (1)
+      Boundary conditions : Free surface (1)
+      Mesh : 2D Cartesian grid (1)
+      Receiver : Displacement seismogram (1)
+      Output : Wavefield at the last time step (1)
+      Output : Seismograms in ASCII format (1)
+
+    title: Tromp-Tape-Liu (GJI 2005)
+
+  receivers:
+    angle: 0.0
+    nstep_between_samples: 1
+    seismogram-type:
+    - displacement
+    stations-file: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/OUTPUT_FILES/STATIONS"
+
+  run-setup:
+    number-of-processors: 1
+    number-of-runs: 1
+
+  simulation-setup:
+    quadrature:
+      quadrature-type: GLL4
+
+    simulation-mode:
+      forward:
+        writer:
+          seismogram:
+            directory: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/OUTPUT_FILES/results"
+            format: ASCII
+          wavefield:
+            directory: "@CMAKE_SOURCE_DIR@/examples/Tromp_2005/OUTPUT_FILES"
+            format: HDF5
+
+    solver:
+      time-marching:
+        time-scheme:
+          dt: 0.02
+          nstep: 2004
+          t0: 8.0
+          type: Newmark

examples/Tromp_2005/CMakeLists.txt

@@ -2,4 +2,5 @@
 CMAKE_MINIMUM_REQUIRED(VERSION 3.17.5)
 
 configure_file(CMakeFiles/Par_File.in ${CMAKE_SOURCE_DIR}/examples/Tromp_2005/Par_File)
-configure_file(CMakeFiles/Snakefile.in ${CMAKE_SOURCE_DIR}/examples/Tromp_2005/Snakefile)
+configure_file(CMakeFiles/forward_config.yaml.in ${CMAKE_SOURCE_DIR}/examples/Tromp_2005/forward_config.yaml)
+configure_file(CMakeFiles/adjoint_config.yaml.in ${CMAKE_SOURCE_DIR}/examples/Tromp_2005/adjoint_config.yaml)