install git; remove pioreactorui.log references; new config; new scri…

…pt to publish pioreactor.local on all interfaces

workspace/scripts/07-install-logging.sh

@@ -11,15 +11,8 @@ install_cleanup_trap
 sudo touch /var/log/pioreactor.log
 sudo chown pioreactor:pioreactor /var/log/pioreactor.log
 # give free conditions so anyone can write to it if needed, ie. www-data
-sudo chmod 660 /var/log/pioreactor.log
-
-# create pioreactorui logs
-sudo touch /var/log/pioreactorui.log
-sudo chown www-data:www-data /var/log/pioreactorui.log
-# give free conditions so anyone can write to it if needed, ie. pioreactor
-sudo chmod 660 /var/log/pioreactorui.log
+sudo chmod 666 /var/log/pioreactor.log
 
 # add a logrotate entry
 sudo cp /files/system/logrotate/pioreactor /etc/logrotate.d/pioreactor
-sudo cp /files/system/logrotate/pioreactorui /etc/logrotate.d/pioreactorui
 

workspace/scripts/files/bash/avahi_aliases.sh

@@ -1,13 +1,28 @@
 #!/bin/bash
 
+# Retrieve the domain alias from the configuration file
 DOMAIN_ALIAS=$(crudini --get /home/pioreactor/.pioreactor/config.ini ui domain_alias)
-IP=$(hostname -I | awk '{print $1}')
 
-while [ "$IP" == "127.0.0.1" ]
-do
+# Function to publish mDNS for each IP
+publish_mdns() {
+    local ip=$1
+    echo "Publishing mDNS for $DOMAIN_ALIAS at IP $ip"
+    /usr/bin/avahi-publish -a -R "$DOMAIN_ALIAS" "$ip" || true &
+}
+
+# Get all IP addresses, ignoring localhost
+while :; do
+    IP_ADDRESSES=$(hostname -I | tr ' ' '\n' | grep -v '^127\.')
+
+    if [ -n "$IP_ADDRESSES" ]; then
+        break
+    fi
+
+    echo "Waiting for a valid network interface..."
     sleep 2
-    IP=$(hostname -I | awk '{print $1}')
 done
 
-
-/usr/bin/avahi-publish -a -R "$DOMAIN_ALIAS" "$IP" || true &
+# Iterate over each IP and publish mDNS
+for IP in $IP_ADDRESSES; do
+    publish_mdns "$IP"
+done

workspace/scripts/files/bash/install_pioreactor_plugin.sh

@@ -95,8 +95,8 @@ if [ "$am_i_leader" = true ]; then
         rsync -a "$install_folder/ui/contrib/" /var/www/pioreactorui/contrib/
     fi
 
-    # broadcast to cluster
-    pios sync-configs --shared
+    # broadcast to cluster, don't crap out if we can't sync to a worker.
+    pios sync-configs --shared || :
 fi
 
 # run a post install scripts.

workspace/scripts/files/config.example.ini

@@ -46,6 +46,9 @@ use_calibration=1
 # apply a smoothing penalizer
 smoothing_penalizer=700.0
 
+# turn off the other LED channels during an OD reading snapshot.
+turn_off_leds_during_reading=1
+
 [od_config.photodiode_channel]
 # Default IR photodiode channel(s) to use and its angle relative to the IR LED(s),
 # OR choose the reference photodiode using the keyword REF.
@@ -71,8 +74,8 @@ number_of_backup_replicates_to_workers=2
 
 [logging]
 # where, on each Rpi, to store the logs
-# note that UI logs go to /var/log/pioreactorui.log
 log_file=/var/log/pioreactor.log
+ui_log_file=/var/log/pioreactor.log
 
 # See Python's logging module for possible values
 # logs also appear in the UI

workspace/scripts/files/system/logrotate/pioreactor

@@ -4,5 +4,5 @@
     rotate 10
     compress
     notifempty
-    create 0660 pioreactor pioreactor
+    create 0666 pioreactor pioreactor
 }

workspace/scripts/install-git.sh

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+set -x
+set -e
+
+export LC_ALL=C
+
+
+source /common.sh
+install_cleanup_trap
+
+sudo apt-get install git -y
+