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diff --git a/.travis.yml b/.travis.yml
diff --git a/README.md b/README.md
@@ -1,10 +1,6 @@
 
 # ErmineR <img src="ermineR.png" align="right" height="100px"/>
 
-[![Build
-Status](https://travis-ci.org/PavlidisLab/ermineR.svg?branch=master)](https://travis-ci.org/PavlidisLab/ermineR)
-[![codecov](https://codecov.io/gh/PavlidisLab/ermineR/branch/master/graph/badge.svg)](https://codecov.io/gh/PavlidisLab/ermineR)
-
 This is an R wrapper for Pavlidis Lab’s
 [ermineJ](http://erminej.msl.ubc.ca/). A tool for gene set enrichment
 analysis with multifunctionality correction.
@@ -140,12 +136,12 @@ head(gsrOut$results) %>% knitr::kable()
 
 | Name                            | ID           | NumProbes | NumGenes | RawScore |   Pval | CorrectedPvalue | MFPvalue | CorrectedMFPvalue | Multifunctionality | Same as | GeneMembers                                                                                                                                                                                                                                                                                   |
 |:--------------------------------|:-------------|----------:|---------:|---------:|-------:|----------------:|---------:|------------------:|-------------------:|:--------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
-| protein folding                 | <GO:0006457> |        40 |       24 | 3.198073 | 0.0000 |       0.0000000 | 0.000000 |         0.0000000 |              0.214 | NA      | AIP\|CALR\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CLGN\|CLPX\|DNAJB1\|DNAJB4\|GAK\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|NUDC\|PFDN6\|PTGES3\|RUVBL2\|ST13\|TCP1\|TOR1A\|UGGT1\|                                                                                                                      |
-| unfolded protein binding        | <GO:0051082> |        52 |       29 | 3.299625 | 0.0000 |       0.0000000 | 0.000000 |         0.0000000 |              0.258 | NA      | AIP\|CALR\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CHAF1A\|CLGN\|CLPX\|DNAJB1\|DNAJB4\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|HTRA2\|NUDC\|PFDN6\|PTGES3\|RUVBL2\|SHQ1\|SRSF10\|TAPBP\|TCP1\|TOMM20\|TOR1A\|TUBB4B\|UGGT1\|                                                                             |
-| cytosol                         | <GO:0005829> |        74 |       41 | 2.118055 | 0.0001 |       0.0031670 | 0.000600 |         0.0190000 |              0.483 | NA      | AAMP\|AIP\|ARC\|BHMT2\|CALR\|CCT5\|CCT6A\|CDC37L1\|CLPX\|CRABP1\|DNAJB1\|DNAJB4\|EPHB2\|FRS2\|GAK\|GEMIN2\|HCK\|HSP90AA1\|HSPA1A\|HSPB6\|HSPD1\|HTRA2\|NELFA\|NUDC\|OGG1\|PASK\|PEX5\|PIKFYVE\|POLR3K\|PRKCI\|PTGES3\|RUVBL2\|SHQ1\|SPHK1\|SRSF10\|ST13\|TCP1\|TOR1A\|TUBB4B\|UNC13B\|USP33\| |
-| cellular component assembly     | <GO:0022607> |        45 |       22 | 2.386422 | 0.0027 |       0.0641250 | 0.006400 |         0.1520000 |              0.560 | NA      | ARC\|CALR\|CHAF1A\|CLGN\|DDX46\|EPHB2\|GAK\|GEMIN2\|HSP90AA1\|HSPA1A\|HSPA9\|HSPD1\|PFDN6\|PIKFYVE\|PTGES3\|RUVBL2\|SHQ1\|SRSF10\|TAPBP\|TCP1\|UNC13B\|ZNF207\|                                                                                                                               |
-| organelle organization          | <GO:0006996> |        34 |       20 | 2.356244 | 0.0035 |       0.0665000 | 0.014600 |         0.1541111 |              0.956 | NA      | ARC\|CALR\|GAK\|HSP90AA1\|HSPA1A\|HSPA9\|HSPD1\|HTRA2\|NUDC\|PEX5\|PIKFYVE\|PRKCI\|PTGES3\|RUVBL2\|TOMM20\|TOR1A\|TUBB4B\|UNC13B\|VPS8\|ZNF207\|                                                                                                                                              |
-| cellular component organization | <GO:0016043> |        68 |       35 | 2.120207 | 0.0041 |       0.0649167 | 0.009901 |         0.1343659 |              0.735 | NA      | ARC\|CALR\|CHAF1A\|CLGN\|DDX46\|EPHB2\|FBLN2\|GAK\|GEMIN2\|HCK\|HSP90AA1\|HSPA1A\|HSPA9\|HSPD1\|HTRA2\|NUDC\|PEX5\|PFDN6\|PIKFYVE\|PRKCI\|PTGES3\|RUVBL2\|SEMA3B\|SHQ1\|SRSF10\|SULF1\|TAPBP\|TCP1\|TOMM20\|TOR1A\|TUBB4B\|UNC13B\|USP33\|VPS8\|ZNF207\|                                      |
+| protein folding                 | <GO:0006457> |        40 |       24 | 3.198073 | 0.0000 |        0.000000 |   0.0000 |         0.0000000 |              0.214 | NA      | AIP\|CALR\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CLGN\|CLPX\|DNAJB1\|DNAJB4\|GAK\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|NUDC\|PFDN6\|PTGES3\|RUVBL2\|ST13\|TCP1\|TOR1A\|UGGT1\|                                                                                                                      |
+| unfolded protein binding        | <GO:0051082> |        52 |       29 | 3.299625 | 0.0000 |        0.000000 |   0.0000 |         0.0000000 |              0.258 | NA      | AIP\|CALR\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CHAF1A\|CLGN\|CLPX\|DNAJB1\|DNAJB4\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|HTRA2\|NUDC\|PFDN6\|PTGES3\|RUVBL2\|SHQ1\|SRSF10\|TAPBP\|TCP1\|TOMM20\|TOR1A\|TUBB4B\|UGGT1\|                                                                             |
+| cytosol                         | <GO:0005829> |        74 |       41 | 2.118055 | 0.0002 |        0.006333 |   0.0002 |         0.0063330 |              0.483 | NA      | AAMP\|AIP\|ARC\|BHMT2\|CALR\|CCT5\|CCT6A\|CDC37L1\|CLPX\|CRABP1\|DNAJB1\|DNAJB4\|EPHB2\|FRS2\|GAK\|GEMIN2\|HCK\|HSP90AA1\|HSPA1A\|HSPB6\|HSPD1\|HTRA2\|NELFA\|NUDC\|OGG1\|PASK\|PEX5\|PIKFYVE\|POLR3K\|PRKCI\|PTGES3\|RUVBL2\|SHQ1\|SPHK1\|SRSF10\|ST13\|TCP1\|TOR1A\|TUBB4B\|UNC13B\|USP33\| |
+| cellular component assembly     | <GO:0022607> |        45 |       22 | 2.386422 | 0.0025 |        0.059375 |   0.0072 |         0.1140000 |              0.560 | NA      | ARC\|CALR\|CHAF1A\|CLGN\|DDX46\|EPHB2\|GAK\|GEMIN2\|HSP90AA1\|HSPA1A\|HSPA9\|HSPD1\|PFDN6\|PIKFYVE\|PTGES3\|RUVBL2\|SHQ1\|SRSF10\|TAPBP\|TCP1\|UNC13B\|ZNF207\|                                                                                                                               |
+| organelle organization          | <GO:0006996> |        34 |       20 | 2.356244 | 0.0032 |        0.060800 |   0.0155 |         0.1636111 |              0.956 | NA      | ARC\|CALR\|GAK\|HSP90AA1\|HSPA1A\|HSPA9\|HSPD1\|HTRA2\|NUDC\|PEX5\|PIKFYVE\|PRKCI\|PTGES3\|RUVBL2\|TOMM20\|TOR1A\|TUBB4B\|UNC13B\|VPS8\|ZNF207\|                                                                                                                                              |
+| cellular component organization | <GO:0016043> |        68 |       35 | 2.120207 | 0.0036 |        0.057000 |   0.0070 |         0.1662500 |              0.735 | NA      | ARC\|CALR\|CHAF1A\|CLGN\|DDX46\|EPHB2\|FBLN2\|GAK\|GEMIN2\|HCK\|HSP90AA1\|HSPA1A\|HSPA9\|HSPD1\|HTRA2\|NUDC\|PEX5\|PFDN6\|PIKFYVE\|PRKCI\|PTGES3\|RUVBL2\|SEMA3B\|SHQ1\|SRSF10\|SULF1\|TAPBP\|TCP1\|TOMM20\|TOR1A\|TUBB4B\|UNC13B\|USP33\|VPS8\|ZNF207\|                                      |
 
 #### Use Precision Recall with gene scores
 
@@ -171,9 +167,9 @@ head(precRecallOut$results) %>% knitr::kable()
 | binding                    | <GO:0005488> |       143 |       81 | 0.9992282 | 0.0000 |       0.0000000 |   0.0000 |         0.0000000 |              0.486 | NA      | AAMP\|AIP\|ARC\|ARF3\|BHMT2\|C5AR2\|CACNA1F\|CALR\|CCNG1\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CHAF1A\|CLGN\|CLPX\|CPT1A\|CRABP1\|DDX46\|DMBT1\|DNAJB1\|DNAJB4\|DZIP3\|EPHB2\|FBLN2\|FOXB1\|FPR3\|FRS2\|GAK\|GEMIN2\|GPR17\|HCK\|HMGCR\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|HTRA2\|ITIH2\|KCNJ1\|LIPF\|MAN1B1\|NELFA\|NR2E3\|NUDC\|OGG1\|PASK\|PEX5\|PFDN6\|PIKFYVE\|PLCH1\|POLR3K\|PPARA\|PRKCI\|PRPSAP1\|PTGES3\|RUVBL2\|SEMA3B\|SHOX2\|SHQ1\|SLC22A14\|SLC24A1\|SPHK1\|SRSF10\|ST13\|SULF1\|TAPBP\|TBKBP1\|TCP1\|TNFRSF12A\|TOMM20\|TOR1A\|TUBB4B\|UGGT1\|UNC13B\|USP33\|VPS8\|YIPF2\|ZCCHC8\|ZNF207\| |
 | protein folding            | <GO:0006457> |        40 |       24 | 0.7176581 | 0.0000 |       0.0000000 |   0.0000 |         0.0000000 |              0.214 | NA      | AIP\|CALR\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CLGN\|CLPX\|DNAJB1\|DNAJB4\|GAK\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|NUDC\|PFDN6\|PTGES3\|RUVBL2\|ST13\|TCP1\|TOR1A\|UGGT1\|                                                                                                                                                                                                                                                                                                                                                                                                                              |
 | unfolded protein binding   | <GO:0051082> |        52 |       29 | 0.8507590 | 0.0000 |       0.0000000 |   0.0000 |         0.0000000 |              0.258 | NA      | AIP\|CALR\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CHAF1A\|CLGN\|CLPX\|DNAJB1\|DNAJB4\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|HTRA2\|NUDC\|PFDN6\|PTGES3\|RUVBL2\|SHQ1\|SRSF10\|TAPBP\|TCP1\|TOMM20\|TOR1A\|TUBB4B\|UGGT1\|                                                                                                                                                                                                                                                                                                                                                                                     |
-| protein binding            | <GO:0005515> |       127 |       73 | 0.9569410 | 0.0001 |       0.0023750 |   0.0002 |         0.0047500 |              0.369 | NA      | AAMP\|AIP\|ARC\|ARF3\|C5AR2\|CALR\|CCNG1\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CHAF1A\|CLGN\|CLPX\|CPT1A\|CRABP1\|DDX46\|DMBT1\|DNAJB1\|DNAJB4\|DZIP3\|EPHB2\|FBLN2\|FOXB1\|FPR3\|FRS2\|GAK\|GEMIN2\|GPR17\|HCK\|HMGCR\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|HTRA2\|ITIH2\|NELFA\|NR2E3\|NUDC\|OGG1\|PASK\|PEX5\|PFDN6\|PIKFYVE\|POLR3K\|PPARA\|PRKCI\|PRPSAP1\|PTGES3\|RUVBL2\|SEMA3B\|SHQ1\|SLC22A14\|SLC24A1\|SPHK1\|SRSF10\|ST13\|TAPBP\|TBKBP1\|TCP1\|TNFRSF12A\|TOMM20\|TOR1A\|TUBB4B\|UGGT1\|UNC13B\|USP33\|VPS8\|YIPF2\|ZCCHC8\|ZNF207\|                                                           |
-| cytosol                    | <GO:0005829> |        74 |       41 | 0.7108333 | 0.0012 |       0.0228000 |   0.0017 |         0.0323000 |              0.483 | NA      | AAMP\|AIP\|ARC\|BHMT2\|CALR\|CCT5\|CCT6A\|CDC37L1\|CLPX\|CRABP1\|DNAJB1\|DNAJB4\|EPHB2\|FRS2\|GAK\|GEMIN2\|HCK\|HSP90AA1\|HSPA1A\|HSPB6\|HSPD1\|HTRA2\|NELFA\|NUDC\|OGG1\|PASK\|PEX5\|PIKFYVE\|POLR3K\|PRKCI\|PTGES3\|RUVBL2\|SHQ1\|SPHK1\|SRSF10\|ST13\|TCP1\|TOR1A\|TUBB4B\|UNC13B\|USP33\|                                                                                                                                                                                                                                                                                                         |
-| cellular anatomical entity | <GO:0110165> |       142 |       80 | 0.9860952 | 0.0022 |       0.0348333 |   0.0022 |         0.0348333 |              0.442 | NA      | AAMP\|AIP\|ARC\|ARF3\|BHMT2\|C5AR2\|CACNA1F\|CALR\|CCNG1\|CCT5\|CCT6A\|CDC37L1\|CHAF1A\|CLGN\|CLPX\|CPT1A\|CRABP1\|DDX46\|DMBT1\|DNAJB1\|DNAJB4\|DZIP3\|EPHB2\|FBLN2\|FOXB1\|FPR3\|FRS2\|GAK\|GEMIN2\|GPR17\|HCK\|HMGCR\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|HTRA2\|ITIH2\|KCNJ1\|LIPF\|MAN1B1\|NELFA\|NR2E3\|NUDC\|OGG1\|PASK\|PEX5\|PFDN6\|PIKFYVE\|PLCH1\|POLR3K\|PPARA\|PRKCI\|PRPSAP1\|PTGES3\|RUVBL2\|SEMA3B\|SHOX2\|SHQ1\|SLC22A14\|SLC24A1\|SPHK1\|SRSF10\|ST13\|SULF1\|TAPBP\|TBKBP1\|TCP1\|TNFRSF12A\|TOMM20\|TOR1A\|TUBB4B\|UGGT1\|UNC13B\|USP33\|VPS8\|YIPF2\|ZCCHC8\|ZNF207\|         |
+| cytosol                    | <GO:0005829> |        74 |       41 | 0.7108333 | 0.0003 |       0.0071250 |   0.0005 |         0.0118750 |              0.483 | NA      | AAMP\|AIP\|ARC\|BHMT2\|CALR\|CCT5\|CCT6A\|CDC37L1\|CLPX\|CRABP1\|DNAJB1\|DNAJB4\|EPHB2\|FRS2\|GAK\|GEMIN2\|HCK\|HSP90AA1\|HSPA1A\|HSPB6\|HSPD1\|HTRA2\|NELFA\|NUDC\|OGG1\|PASK\|PEX5\|PIKFYVE\|POLR3K\|PRKCI\|PTGES3\|RUVBL2\|SHQ1\|SPHK1\|SRSF10\|ST13\|TCP1\|TOR1A\|TUBB4B\|UNC13B\|USP33\|                                                                                                                                                                                                                                                                                                         |
+| protein binding            | <GO:0005515> |       127 |       73 | 0.9569410 | 0.0005 |       0.0095000 |   0.0006 |         0.0114000 |              0.369 | NA      | AAMP\|AIP\|ARC\|ARF3\|C5AR2\|CALR\|CCNG1\|CCT5\|CCT6A\|CCT8L2\|CDC37L1\|CHAF1A\|CLGN\|CLPX\|CPT1A\|CRABP1\|DDX46\|DMBT1\|DNAJB1\|DNAJB4\|DZIP3\|EPHB2\|FBLN2\|FOXB1\|FPR3\|FRS2\|GAK\|GEMIN2\|GPR17\|HCK\|HMGCR\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|HTRA2\|ITIH2\|NELFA\|NR2E3\|NUDC\|OGG1\|PASK\|PEX5\|PFDN6\|PIKFYVE\|POLR3K\|PPARA\|PRKCI\|PRPSAP1\|PTGES3\|RUVBL2\|SEMA3B\|SHQ1\|SLC22A14\|SLC24A1\|SPHK1\|SRSF10\|ST13\|TAPBP\|TBKBP1\|TCP1\|TNFRSF12A\|TOMM20\|TOR1A\|TUBB4B\|UGGT1\|UNC13B\|USP33\|VPS8\|YIPF2\|ZCCHC8\|ZNF207\|                                                           |
+| cellular anatomical entity | <GO:0110165> |       142 |       80 | 0.9860952 | 0.0011 |       0.0174167 |   0.0014 |         0.0221667 |              0.442 | NA      | AAMP\|AIP\|ARC\|ARF3\|BHMT2\|C5AR2\|CACNA1F\|CALR\|CCNG1\|CCT5\|CCT6A\|CDC37L1\|CHAF1A\|CLGN\|CLPX\|CPT1A\|CRABP1\|DDX46\|DMBT1\|DNAJB1\|DNAJB4\|DZIP3\|EPHB2\|FBLN2\|FOXB1\|FPR3\|FRS2\|GAK\|GEMIN2\|GPR17\|HCK\|HMGCR\|HSP90AA1\|HSPA1A\|HSPA9\|HSPB6\|HSPD1\|HTRA2\|ITIH2\|KCNJ1\|LIPF\|MAN1B1\|NELFA\|NR2E3\|NUDC\|OGG1\|PASK\|PEX5\|PFDN6\|PIKFYVE\|PLCH1\|POLR3K\|PPARA\|PRKCI\|PRPSAP1\|PTGES3\|RUVBL2\|SEMA3B\|SHOX2\|SHQ1\|SLC22A14\|SLC24A1\|SPHK1\|SRSF10\|ST13\|SULF1\|TAPBP\|TBKBP1\|TCP1\|TNFRSF12A\|TOMM20\|TOR1A\|TUBB4B\|UGGT1\|UNC13B\|USP33\|VPS8\|YIPF2\|ZCCHC8\|ZNF207\|         |
 
 #### Use ORA with a hitlist
 

diff --git a/README.rmd b/README.rmd
@@ -8,7 +8,6 @@ devtools::load_all()
 
 # ErmineR <img src="ermineR.png" align="right" height="100px"/>
 
-[![Build Status](https://travis-ci.org/PavlidisLab/ermineR.svg?branch=master)](https://travis-ci.org/PavlidisLab/ermineR) [![codecov](https://codecov.io/gh/PavlidisLab/ermineR/branch/master/graph/badge.svg)](https://codecov.io/gh/PavlidisLab/ermineR)
 
 This is an R wrapper for Pavlidis Lab's [ermineJ](http://erminej.msl.ubc.ca/). A tool for gene set enrichment analysis with multifunctionality correction.
 

diff --git a/appveyor.yml b/appveyor.yml
Original file line number	Diff line number	Diff line change
Expand Up		@@ -8,7 +8,6 @@ devtools::load_all()

		# ErmineR <img src="ermineR.png" align="right" height="100px"/>

		[![Build Status](https://travis-ci.org/PavlidisLab/ermineR.svg?branch=master)](https://travis-ci.org/PavlidisLab/ermineR) [![codecov](https://codecov.io/gh/PavlidisLab/ermineR/branch/master/graph/badge.svg)](https://codecov.io/gh/PavlidisLab/ermineR)

		This is an R wrapper for Pavlidis Lab's [ermineJ](http://erminej.msl.ubc.ca/). A tool for gene set enrichment analysis with multifunctionality correction.

Expand Down