Make full release

PHI-base · Aug 29, 2024 · 1dde1ec · 1dde1ec
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commit 1dde1ec
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Showing 24 changed files with 8,058 additions and 4,219 deletions.
diff --git a/patterns/definitions.owl b/patterns/definitions.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/phipo/patterns/definitions.owl>
-<http://purl.obolibrary.org/obo/phipo/releases/2024-04-04/patterns/definitions.owl>
-Annotation(owl:versionInfo "2024-04-04")
+<http://purl.obolibrary.org/obo/phipo/releases/2024-08-29/patterns/definitions.owl>
+Annotation(owl:versionInfo "2024-08-29")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CARO_0010004>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CHEBI_100147>))

diff --git a/phipo-base.json b/phipo-base.json
@@ -22,9 +22,9 @@
         "val" : "https://creativecommons.org/licenses/by/3.0/"
       }, {
         "pred" : "http://www.w3.org/2002/07/owl#versionInfo",
-        "val" : "2024-04-04"
+        "val" : "2024-08-29"
       } ],
-      "version" : "http://purl.obolibrary.org/obo/phipo/releases/2024-04-04/phipo-base.json"
+      "version" : "http://purl.obolibrary.org/obo/phipo/releases/2024-08-29/phipo-base.json"
     },
     "nodes" : [ {
       "id" : "http://purl.obolibrary.org/obo/PHIPO_0000001",
@@ -27775,6 +27775,44 @@
           "val" : "single_species_phenotype"
         } ]
       }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/PHIPO_0001439",
+      "lbl" : "increased number of septum in asexual spore",
+      "type" : "CLASS",
+      "meta" : {
+        "definition" : {
+          "val" : "A single species phenotype where the frequency of occurrence of septum within an asexual spore is increased."
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
+          "val" : "alaynecuzick"
+        }, {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
+          "val" : "2024-08-03T10:37:57Z"
+        }, {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
+          "val" : "single_species_phenotype"
+        } ]
+      }
+    }, {
+      "id" : "http://purl.obolibrary.org/obo/PHIPO_0001440",
+      "lbl" : "increased number of nuclei in asexual spore",
+      "type" : "CLASS",
+      "meta" : {
+        "definition" : {
+          "val" : "A single species phenotype where the frequency of occurrence of nuclei within an asexual spore is increased."
+        },
+        "basicPropertyValues" : [ {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#created_by",
+          "val" : "alaynecuzick"
+        }, {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#creation_date",
+          "val" : "2024-08-03T10:45:41Z"
+        }, {
+          "pred" : "http://www.geneontology.org/formats/oboInOwl#hasOBONamespace",
+          "val" : "single_species_phenotype"
+        } ]
+      }
     } ],
     "edges" : [ {
       "sub" : "http://purl.obolibrary.org/obo/PHIPO_0000001",
@@ -32308,6 +32346,14 @@
       "sub" : "http://purl.obolibrary.org/obo/PHIPO_0001438",
       "pred" : "is_a",
       "obj" : "http://purl.obolibrary.org/obo/PHIPO_0001308"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/PHIPO_0001439",
+      "pred" : "is_a",
+      "obj" : "http://purl.obolibrary.org/obo/PHIPO_0000127"
+    }, {
+      "sub" : "http://purl.obolibrary.org/obo/PHIPO_0001440",
+      "pred" : "is_a",
+      "obj" : "http://purl.obolibrary.org/obo/PHIPO_0000127"
     } ]
   } ]
 }
diff --git a/phipo-base.obo b/phipo-base.obo
@@ -1,13 +1,13 @@
 format-version: 1.2
-data-version: phipo/releases/2024-04-04/phipo-base.owl
+data-version: phipo/releases/2024-08-29/phipo-base.owl
 ontology: phipo/phipo-base
 property_value: created:by "alaynecuzick" xsd:string
 property_value: creation:date "2018-07-09T13:43:00Z" xsd:string
 property_value: http://purl.org/dc/elements/1.1/description "Ontology of species-neutral phenotypes observed in pathogen-host interactions." xsd:string
 property_value: http://purl.org/dc/elements/1.1/title "Pathogen Host Interactions Phenotype Ontology" xsd:string
 property_value: http://purl.org/dc/elements/1.1/type IAO:8000001
 property_value: http://purl.org/dc/terms/license "https://creativecommons.org/licenses/by/3.0/" xsd:string
-property_value: owl:versionInfo "2024-04-04" xsd:string
+property_value: owl:versionInfo "2024-08-29" xsd:string
 
 [Term]
 id: PHIPO:0000001
@@ -12848,6 +12848,24 @@ is_a: PHIPO:0001308 ! normal growth on chemical
 created_by: alaynecuzick
 creation_date: 2024-03-27T11:45:23Z
 
+[Term]
+id: PHIPO:0001439
+name: increased number of septum in asexual spore
+namespace: single_species_phenotype
+def: "A single species phenotype where the frequency of occurrence of septum within an asexual spore is increased." []
+is_a: PHIPO:0000127 ! abnormal asexual spore morphology
+created_by: alaynecuzick
+creation_date: 2024-08-03T10:37:57Z
+
+[Term]
+id: PHIPO:0001440
+name: increased number of nuclei in asexual spore
+namespace: single_species_phenotype
+def: "A single species phenotype where the frequency of occurrence of nuclei within an asexual spore is increased." []
+is_a: PHIPO:0000127 ! abnormal asexual spore morphology
+created_by: alaynecuzick
+creation_date: 2024-08-03T10:45:41Z
+
 [Typedef]
 id: PHIPO:0000304
 name: qualifier

diff --git a/phipo-base.owl b/phipo-base.owl
@@ -21,14 +21,14 @@
      xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
      xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/phipo/phipo-base.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/phipo/releases/2024-04-04/phipo-base.owl"/>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/phipo/releases/2024-08-29/phipo-base.owl"/>
         <obo:created_by>alaynecuzick</obo:created_by>
         <obo:creation_date>2018-07-09T13:43:00Z</obo:creation_date>
         <dc:description>Ontology of species-neutral phenotypes observed in pathogen-host interactions.</dc:description>
         <dc:title>Pathogen Host Interactions Phenotype Ontology</dc:title>
         <dc:type rdf:resource="http://purl.obolibrary.org/obo/IAO_8000001"/>
         <terms:license>https://creativecommons.org/licenses/by/3.0/</terms:license>
-        <owl:versionInfo>2024-04-04</owl:versionInfo>
+        <owl:versionInfo>2024-08-29</owl:versionInfo>
     </owl:Ontology>
 
 
@@ -32499,6 +32499,32 @@ occurs to a lesser extent than normal.</obo:IAO_0000115>
         <oboInOwl:id>PHIPO:0001438</oboInOwl:id>
         <rdfs:label>normal growth on bifonazole</rdfs:label>
     </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/PHIPO_0001439 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PHIPO_0001439">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PHIPO_0000127"/>
+        <obo:IAO_0000115>A single species phenotype where the frequency of occurrence of septum within an asexual spore is increased.</obo:IAO_0000115>
+        <oboInOwl:created_by>alaynecuzick</oboInOwl:created_by>
+        <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-08-03T10:37:57Z</oboInOwl:creation_date>
+        <oboInOwl:hasOBONamespace>single_species_phenotype</oboInOwl:hasOBONamespace>
+        <rdfs:label xml:lang="en">increased number of septum in asexual spore</rdfs:label>
+    </owl:Class>
+
+
+
+    <!-- http://purl.obolibrary.org/obo/PHIPO_0001440 -->
+
+    <owl:Class rdf:about="http://purl.obolibrary.org/obo/PHIPO_0001440">
+        <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/PHIPO_0000127"/>
+        <obo:IAO_0000115>A single species phenotype where the frequency of occurrence of nuclei within an asexual spore is increased.</obo:IAO_0000115>
+        <oboInOwl:created_by>alaynecuzick</oboInOwl:created_by>
+        <oboInOwl:creation_date rdf:datatype="http://www.w3.org/2001/XMLSchema#dateTime">2024-08-03T10:45:41Z</oboInOwl:creation_date>
+        <oboInOwl:hasOBONamespace>single_species_phenotype</oboInOwl:hasOBONamespace>
+        <rdfs:label xml:lang="en">increased number of nuclei in asexual spore</rdfs:label>
+    </owl:Class>
 </rdf:RDF>