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Release 2024.2.0 #308

Merged
merged 101 commits into from
Jul 9, 2024
Merged

Release 2024.2.0 #308

merged 101 commits into from
Jul 9, 2024

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lohedges
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@lohedges lohedges commented Jul 4, 2024

This is the PR for the 2024.2.0 release of BioSimSpace.

  • I confirm that I have merged the latest version of devel into this branch before issuing this pull request (e.g. by running git pull origin devel): [y]
  • I confirm that I have added a test for any new functionality in this pull request: [y]
  • I confirm that I have added documentation (e.g. a new tutorial page or detailed guide) for any new functionality in this pull request: [y]
  • I confirm that I have permission to release this code under the GPL3 license: [y]

akalpokas and others added 30 commits February 20, 2024 18:30
mapping for large molecules. This allows for the set up of protein FEP calculations (for example point mutations and covalent modifications).  The merge code has also been modified to allow for multiple perturbable region of interests, which allows for multiple mutations FEP calculations to be run at the same time.
This functionality is needed in special cases where default rdKit MCS algorithm fails to provide suitable mappings.
which allows for more fine-grained matching for protein residues
This code works by breaking the two proteins into per-residue-parts and aligning each residue individually. The coordinates of the aligned residues are then used to update the coordinates of the input protein to be aligned.
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:11 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:11 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:11 — with GitHub Actions Inactive
@lohedges lohedges had a problem deploying to biosimspace-build July 4, 2024 12:11 — with GitHub Actions Failure
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:11 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:59 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:59 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:59 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:59 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 4, 2024 12:59 — with GitHub Actions Inactive
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lohedges commented Jul 4, 2024

As expected, there are no issues building against Sire 2024.2.0. Just waiting for an additional tutorial page on the new protein FEP functionality, then we'll be good to go. (Sometime next week.) Will merge that into this branch, then update the release date in the CHANGELOG.

@lohedges lohedges temporarily deployed to biosimspace-build July 8, 2024 11:22 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 8, 2024 11:22 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 8, 2024 11:22 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 8, 2024 11:22 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build July 8, 2024 11:22 — with GitHub Actions Inactive
@lohedges lohedges merged commit 25c62e4 into main Jul 9, 2024
@lohedges lohedges deleted the release_2024.2.0 branch July 9, 2024 08:39
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3 participants