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Replace Deprecated np.float with np.float64 in nd2reader #70

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Jan 15, 2025
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Replace Deprecated np.float with np.float64 in nd2reader #70

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9b143c9
fix numpy float type
mansouralawi Nov 20, 2023
bea7163
Update numpy requirements.txt
mansouralawi Dec 31, 2024
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6 changes: 3 additions & 3 deletions nd2reader/raw_metadata.py
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Expand Up @@ -293,9 +293,9 @@ def _parse_roi(self, raw_roi_dict):
roi_dict = self._parse_vect_anim(roi_dict, raw_roi_dict[six.b('m_vectAnimParams_%d' % i)])

# convert to NumPy arrays
roi_dict["timepoints"] = np.array(roi_dict["timepoints"], dtype=np.float)
roi_dict["positions"] = np.array(roi_dict["positions"], dtype=np.float)
roi_dict["sizes"] = np.array(roi_dict["sizes"], dtype=np.float)
roi_dict["timepoints"] = np.array(roi_dict["timepoints"], dtype=np.float64)
roi_dict["positions"] = np.array(roi_dict["positions"], dtype=np.float64)
roi_dict["sizes"] = np.array(roi_dict["sizes"], dtype=np.float64)

return roi_dict

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2 changes: 1 addition & 1 deletion nd2reader/reader.py
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Expand Up @@ -227,7 +227,7 @@ def get_timesteps(self):
return self._timesteps

self._timesteps = (
np.array(list(self._parser._raw_metadata.acquisition_times), dtype=np.float)
np.array(list(self._parser._raw_metadata.acquisition_times), dtype=np.float64)
* 1000.0
)

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2 changes: 1 addition & 1 deletion requirements.txt
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@@ -1,4 +1,4 @@
numpy>=1.14
numpy>=1.20
six>=1.4
xmltodict>=0.9.2
pims>=0.3.0
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