Update GSI analysis jobs to use COMIN/COMOUT (#3092)

NCO has requested that each COM variable specify whether it is an input or an output. This completes that process for the global jgdas enkf select obs job and relevant .JGLOBAL_ATMOS_ANALYSIS and JGLOBAL_ATMOS_ANALYSIS_CALC jobs. Refs #2451
NOAA-EMC · Dec 12, 2024 · 7090cff · 7090cff
1 parent 6c5b9bb
commit 7090cff
Show file tree

Hide file tree

Showing 8 changed files with 206 additions and 197 deletions.
diff --git a/jobs/JGDAS_ENKF_SELECT_OBS b/jobs/JGDAS_ENKF_SELECT_OBS
@@ -32,21 +32,25 @@ GPREFIX_DET="${GDUMP}.t${gcyc}z."
 export GSUFFIX=".ensmean.nc"
 
 # Generate COM variables from templates
-RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COM_OBS
-MEMDIR='ensstat' YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COM_ATMOS_ANALYSIS
-declare -rx COM_ATMOS_ANALYSIS_ENS="${COM_ATMOS_ANALYSIS}"
+RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \
+	COMIN_OBS:COM_OBS_TMPL
+MEMDIR='ensstat' YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \
+	COMOUT_ATMOS_ANALYSIS:COM_ATMOS_ANALYSIS_TMPL
+declare -rx COMOUT_ATMOS_ANALYSIS_ENS="${COMOUT_ATMOS_ANALYSIS}"
 
-RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -r COM_ATMOS_ANALYSIS_DET:COM_ATMOS_ANALYSIS_TMPL
+RUN=${RUN/enkf} YMD=${PDY} HH=${cyc} declare_from_tmpl -r \
+	COMOUT_ATMOS_ANALYSIS_DET:COM_ATMOS_ANALYSIS_TMPL
 
 MEMDIR='ensstat' RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \
-    COM_ATMOS_ANALYSIS_PREV:COM_ATMOS_ANALYSIS_TMPL \
-    COM_ATMOS_HISTORY_PREV:COM_ATMOS_HISTORY_TMPL \
+    COMIN_ATMOS_ANALYSIS_PREV:COM_ATMOS_ANALYSIS_TMPL \
+    COMIN_ATMOS_HISTORY_PREV:COM_ATMOS_HISTORY_TMPL 
 
-RUN="${GDUMP}" YMD=${gPDY} HH=${gcyc} declare_from_tmpl -r COM_ATMOS_ANALYSIS_DET_PREV:COM_ATMOS_ANALYSIS_TMPL
+RUN="${GDUMP}" YMD=${gPDY} HH=${gcyc} declare_from_tmpl -r \
+	COMIN_ATMOS_ANALYSIS_DET_PREV:COM_ATMOS_ANALYSIS_TMPL
 
-mkdir -m 775 -p "${COM_ATMOS_ANALYSIS}"
+mkdir -p "${COMOUT_ATMOS_ANALYSIS}"
 
-export ATMGES_ENSMEAN="${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006${GSUFFIX}"
+export ATMGES_ENSMEAN="${COMIN_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006${GSUFFIX}"
 if [[ ! -f ${ATMGES_ENSMEAN} ]]; then
     echo "FATAL ERROR: FILE MISSING: ATMGES_ENSMEAN = ${ATMGES_ENSMEAN}"
     exit 1
@@ -61,44 +65,44 @@ status=$?
 export LEVS
 
 # Link observational data
-export PREPQC="${COM_OBS}/${OPREFIX}prepbufr"
+export PREPQC="${COMIN_OBS}/${OPREFIX}prepbufr"
 if [[ ! -f ${PREPQC} ]]; then
     echo "WARNING: Global PREPBUFR FILE ${PREPQC} MISSING"
 fi
-export TCVITL="${COM_OBS}/${APREFIX_DET}syndata.tcvitals.tm00"
+export TCVITL="${COMIN_OBS}/${APREFIX_DET}syndata.tcvitals.tm00"
 if [[ ${DONST} = "YES" ]]; then
-   export NSSTBF="${COM_OBS}/${OPREFIX}nsstbufr"
+   export NSSTBF="${COMIN_OBS}/${OPREFIX}nsstbufr"
 fi
-export PREPQCPF="${COM_OBS}/${OPREFIX}prepbufr.acft_profiles"
+export PREPQCPF="${COMIN_OBS}/${OPREFIX}prepbufr.acft_profiles"
 
 # Deterministic analysis and increment files
-export SFCANL="${COM_ATMOS_ANALYSIS_DET}/${APREFIX_DET}sfcanl.nc"
-export DTFANL="${COM_ATMOS_ANALYSIS_DET}/${APREFIX_DET}dtfanl.nc"
-export ATMANL="${COM_ATMOS_ANALYSIS_DET}/${APREFIX_DET}atmanl.nc"
-export ATMINC="${COM_ATMOS_ANALYSIS_DET}/${APREFIX_DET}atminc.nc"
+export SFCANL="${COMOUT_ATMOS_ANALYSIS_DET}/${APREFIX_DET}sfcanl.nc"
+export DTFANL="${COMOUT_ATMOS_ANALYSIS_DET}/${APREFIX_DET}dtfanl.nc"
+export ATMANL="${COMOUT_ATMOS_ANALYSIS_DET}/${APREFIX_DET}atmanl.nc"
+export ATMINC="${COMOUT_ATMOS_ANALYSIS_DET}/${APREFIX_DET}atminc.nc"
 
 # Guess Bias correction coefficients related to control
-export GBIAS=${COM_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias
-export GBIASPC=${COM_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias_pc
-export GBIASAIR=${COM_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias_air
-export GRADSTAT=${COM_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}radstat
+export GBIAS=${COMIN_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias
+export GBIASPC=${COMIN_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias_pc
+export GBIASAIR=${COMIN_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}abias_air
+export GRADSTAT=${COMIN_ATMOS_ANALYSIS_DET_PREV}/${GPREFIX_DET}radstat
 
 # Bias correction coefficients related to ensemble mean
-export ABIAS="${COM_ATMOS_ANALYSIS}/${APREFIX}abias.ensmean"
-export ABIASPC="${COM_ATMOS_ANALYSIS}/${APREFIX}abias_pc.ensmean"
-export ABIASAIR="${COM_ATMOS_ANALYSIS}/${APREFIX}abias_air.ensmean"
-export ABIASe="${COM_ATMOS_ANALYSIS}/${APREFIX}abias_int.ensmean"
+export ABIAS="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias.ensmean"
+export ABIASPC="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias_pc.ensmean"
+export ABIASAIR="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias_air.ensmean"
+export ABIASe="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias_int.ensmean"
 
 # Diagnostics related to ensemble mean
-export GSISTAT="${COM_ATMOS_ANALYSIS}/${APREFIX}gsistat.ensmean"
-export CNVSTAT="${COM_ATMOS_ANALYSIS}/${APREFIX}cnvstat.ensmean"
-export OZNSTAT="${COM_ATMOS_ANALYSIS}/${APREFIX}oznstat.ensmean"
-export RADSTAT="${COM_ATMOS_ANALYSIS}/${APREFIX}radstat.ensmean"
+export GSISTAT="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}gsistat.ensmean"
+export CNVSTAT="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}cnvstat.ensmean"
+export OZNSTAT="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}oznstat.ensmean"
+export RADSTAT="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}radstat.ensmean"
 
 # Select observations based on ensemble mean
 export RUN_SELECT="YES"
 export USE_SELECT="NO"
-export SELECT_OBS="${COM_ATMOS_ANALYSIS}/${APREFIX}obsinput.ensmean"
+export SELECT_OBS="${COMOUT_ATMOS_ANALYSIS}/${APREFIX}obsinput.ensmean"
 
 export DIAG_SUFFIX="_ensmean"
 

diff --git a/jobs/JGLOBAL_ATMOS_ANALYSIS b/jobs/JGLOBAL_ATMOS_ANALYSIS
@@ -31,18 +31,20 @@ export APREFIX="${rCDUMP}.t${cyc}z."
 export GPREFIX_ENS="${GDUMP_ENS}.t${gcyc}z."
 
 # Generate COM variables from templates
-YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COM_OBS COM_ATMOS_ANALYSIS
+YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \
+	COMIN_OBS:COM_OBS_TMPL \
+	COMOUT_ATMOS_ANALYSIS:COM_ATMOS_ANALYSIS_TMPL
 
 RUN=${GDUMP} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \
-    COM_ATMOS_ANALYSIS_PREV:COM_ATMOS_ANALYSIS_TMPL \
-    COM_ATMOS_HISTORY_PREV:COM_ATMOS_HISTORY_TMPL
+    COMIN_ATMOS_ANALYSIS_PREV:COM_ATMOS_ANALYSIS_TMPL \
+    COMIN_ATMOS_HISTORY_PREV:COM_ATMOS_HISTORY_TMPL
 
 MEMDIR='ensstat' RUN=${GDUMP_ENS} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \
-    COM_ATMOS_HISTORY_ENS_PREV:COM_ATMOS_HISTORY_TMPL
+    COMIN_ATMOS_HISTORY_ENS_PREV:COM_ATMOS_HISTORY_TMPL
 
-mkdir -m 775 -p "${COM_ATMOS_ANALYSIS}"
+mkdir -p "${COMOUT_ATMOS_ANALYSIS}"
 
-export ATMGES="${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006.nc"
+export ATMGES="${COMIN_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006.nc"
 if [ ! -f ${ATMGES} ]; then
     echo "FATAL ERROR: FILE MISSING: ATMGES = ${ATMGES}"
     exit 1
@@ -55,7 +57,7 @@ status=$?
 
 
 if [ ${DOHYBVAR} = "YES" ]; then
-    export ATMGES_ENSMEAN="${COM_ATMOS_HISTORY_ENS_PREV}/${GPREFIX_ENS}atmf006.ensmean.nc"
+    export ATMGES_ENSMEAN="${COMIN_ATMOS_HISTORY_ENS_PREV}/${GPREFIX_ENS}atmf006.ensmean.nc"
     if [ ! -f ${ATMGES_ENSMEAN} ]; then
         echo "FATAL ERROR: FILE MISSING: ATMGES_ENSMEAN = ${ATMGES_ENSMEAN}"
         exit 2
@@ -64,17 +66,17 @@ fi
 
 
 # Link observational data
-export PREPQC="${COM_OBS}/${OPREFIX}prepbufr"
+export PREPQC="${COMIN_OBS}/${OPREFIX}prepbufr"
 if [[ ! -f ${PREPQC} ]]; then
     echo "WARNING: Global PREPBUFR FILE ${PREPQC} MISSING"
 fi
-export TCVITL="${COM_OBS}/${OPREFIX}syndata.tcvitals.tm00"
+export TCVITL="${COMIN_OBS}/${OPREFIX}syndata.tcvitals.tm00"
 if [[ ${DONST} = "YES" ]]; then
    if [[ ${MAKE_NSSTBUFR} == "YES" ]]; then
-      export NSSTBF="${COM_OBS}/${OPREFIX}nsstbufr"
+      export NSSTBF="${COMIN_OBS}/${OPREFIX}nsstbufr"
    fi
 fi
-export PREPQCPF="${COM_OBS}/${OPREFIX}prepbufr.acft_profiles"
+export PREPQCPF="${COMIN_OBS}/${OPREFIX}prepbufr.acft_profiles"
 
 # Copy fix file for obsproc  # TODO: Why is this necessary?
 if [[ ${RUN} = "gfs" ]]; then
@@ -95,9 +97,9 @@ status=$?
 # Send Alerts
 ##############################################
 if [ ${SENDDBN} = YES -a ${RUN} = gdas ] ; then
-    ${DBNROOT}/bin/dbn_alert MODEL GDAS_MSC_abias ${job} ${COM_ATMOS_ANALYSIS}/${APREFIX}abias
-    ${DBNROOT}/bin/dbn_alert MODEL GDAS_MSC_abias_pc ${job} ${COM_ATMOS_ANALYSIS}/${APREFIX}abias_pc
-    ${DBNROOT}/bin/dbn_alert MODEL GDAS_MSC_abias_air ${job} ${COM_ATMOS_ANALYSIS}/${APREFIX}abias_air
+    ${DBNROOT}/bin/dbn_alert MODEL GDAS_MSC_abias ${job} ${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias
+    ${DBNROOT}/bin/dbn_alert MODEL GDAS_MSC_abias_pc ${job} ${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias_pc
+    ${DBNROOT}/bin/dbn_alert MODEL GDAS_MSC_abias_air ${job} ${COMOUT_ATMOS_ANALYSIS}/${APREFIX}abias_air
 fi
 
 

diff --git a/jobs/JGLOBAL_ATMOS_ANALYSIS_CALC b/jobs/JGLOBAL_ATMOS_ANALYSIS_CALC
@@ -28,16 +28,19 @@ export GPREFIX="${GDUMP}.t${gcyc}z."
 export APREFIX="${RUN}.t${cyc}z."
 export GPREFIX_ENS="${GDUMP_ENS}.t${gcyc}z."
 
-RUN=${rCDUMP} YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COM_OBS
+RUN=${rCDUMP} YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \
+    COMIN_OBS:COM_OBS_TMPL
 
-YMD=${PDY} HH=${cyc} declare_from_tmpl -rx COM_ATMOS_ANALYSIS COM_ATMOS_RESTART
+YMD=${PDY} HH=${cyc} declare_from_tmpl -rx \
+    COMOUT_ATMOS_ANALYSIS:COM_ATMOS_ANALYSIS_TMPL \
+    COMIN_ATMOS_RESTART:COM_ATMOS_RESTART_TMPL
 
 RUN=${GDUMP} YMD=${gPDY} HH=${gcyc} declare_from_tmpl -rx \
-    COM_OBS_PREV:COM_OBS_TMPL \
-    COM_ATMOS_HISTORY_PREV:COM_ATMOS_HISTORY_TMPL
+    COMIN_OBS_PREV:COM_OBS_TMPL \
+    COMIN_ATMOS_HISTORY_PREV:COM_ATMOS_HISTORY_TMPL
 
 
-export ATMGES="${COM_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006.nc"
+export ATMGES="${COMIN_ATMOS_HISTORY_PREV}/${GPREFIX}atmf006.nc"
 if [ ! -f ${ATMGES} ]; then
     echo "FATAL ERROR: FILE MISSING: ATMGES = ${ATMGES}"
     exit 1