Merging lesson from Delta Aug 2023 into main

.github/workflows/main.yml

@@ -7,11 +7,12 @@ on:
 jobs:
   dispatch:
     runs-on: ubuntu-latest
+
     steps:
     - name: Repository Dispatch
       uses: peter-evans/[email protected]
       with:
         token: ${{ secrets.RRCOURSE }}
         repository: nceas/repro-research-course
         event-type: quarto
-        client-payload: '{"branch": "${{ github.ref_name }}"}'
+        client-payload: '{"branch": "${{ github.ref_name }}"}'

materials/DESCRIPTION

@@ -34,6 +34,7 @@ Imports:
     pdftools,
     pins,
     plyt,
+    quanteda,
     qualtRics,
     readr,
     reshape2,

materials/_quarto.yml

@@ -28,22 +28,22 @@ book:
   chapters:
     - index.qmd # preface
     - session_01.qmd # collaborating using git & github and merge conflicts
-    - session_02.qmd # social aspects of collaboration
-    - session_03.qmd # thinking preferences
-    - session_04.qmd # synthesis
-    - session_05.qmd # publishing to web
-    - session_06.qmd # data vis
-    - session_07.qmd # systematic reviews
-    - session_08.qmd # synthesis
-    - session_09.qmd # spatial data
-    - session_10.qmd # intro to meta-analysis
-    - session_11.qmd # text data
-    - session_12.qmd # census data
+    - session_02.qmd # publishing to web
+    - session_03.qmd # data viz
+    - session_04.qmd # Practice session
+    - session_05.qmd # synthesis: setting goals
+    - session_07.qmd # thinking preferences
+    - session_06.qmd # social aspects of collaboration
+    - session_08.qmd # synthesis: data policies
+    - session_09.qmd # synthesis
+    - session_10.qmd # spatial data
+    - session_11.qmd # census data
+    - session_12.qmd # text data
     - session_13.qmd # reproducible surveys
-    - session_14.qmd # spatial demographis specialist
-    - session_15.qmd # synthesis
+    - session_14.qmd # synthesis
+    # - session_15.qmd # synthesis
     - session_16.qmd # shiny
-    - session_17.qmd # 2FA setup
+    - session_17.qmd # 2FA setup + reset token
 
 
 bibliography: book.bib

materials/book.bib

@@ -273,3 +273,58 @@ @article{michener2015
     number = {10},
 
 }
+
+
+@article{farrell2022,
+	title = {Past and future uses of text mining in ecology and evolution},
+	author = {Farrell, Maxwell J. and Brierley, Liam and Willoughby, Anna and Yates, Andrew and Mideo, Nicole},
+	year = {2022},
+	month = {05},
+	date = {2022-05-18},
+	journal = {Proceedings of the Royal Society B: Biological Sciences},
+	volume = {289},
+	number = {1975},
+	doi = {10.1098/rspb.2021.2721},
+	url = {http://dx.doi.org/10.1098/rspb.2021.2721},
+	langid = {en}
+}
+
+@article{froehlich2017,
+	title = {Public Perceptions of Aquaculture: Evaluating Spatiotemporal Patterns of Sentiment around the World},
+	author = {Froehlich, Halley E. and Gentry, Rebecca R. and Rust, Michael B. and Grimm, Dietmar and Halpern, Benjamin S.},
+	editor = {Somers, Christopher M.},
+	year = {2017},
+	month = {01},
+	date = {2017-01-03},
+	journal = {PLOS ONE},
+	pages = {e0169281},
+	volume = {12},
+	number = {1},
+	doi = {10.1371/journal.pone.0169281},
+	url = {http://dx.doi.org/10.1371/journal.pone.0169281},
+	langid = {en}
+}
+
+@article{vanhoutan2020,
+	title = {Sentiment Analysis of Conservation Studies Captures Successes of Species Reintroductions},
+	author = {Van Houtan, Kyle S. and Gagne, Tyler and Jenkins, Clinton N. and Joppa, Lucas},
+	year = {2020},
+	month = {04},
+	date = {2020-04},
+	journal = {Patterns},
+	pages = {100005},
+	volume = {1},
+	number = {1},
+	doi = {10.1016/j.patter.2020.100005},
+	url = {http://dx.doi.org/10.1016/j.patter.2020.100005},
+	langid = {en}
+}
+
+
+@misc{tidycensus2021,
+	title = {tidycensus: Load US Census Boundary and Attribute Data as ’Tidyverse’ and ’Sf’ -Ready Data Frames},
+	author = {Walker, Kyle, and Matt, Herman},
+	year = {2021},
+	howpublished = "\url{https://github.com/walkerke/tidycensus.}"
+}
+

materials/index.qmd

@@ -25,21 +25,17 @@ NCEAS has over 25 years of success with this model among working groups and envi
 *Aug 28 - Sep 1, 2023*
 
 - Strengthen core knowledge of version control and workflow
-- Introduce metaanalysis concepts and tools
-- Approaches for geospatial visualization
+- Approaches for data visualization including geospatial data
 - Data tools for qualitative data
-
+- Building scientific websites with R and Shiny 
 
 ## Schedule
 
-UPDATE IMAGE WITH WEEK 2 SCHEDULE
-
 :::{.column-page}
-<!--![](images/schedule.png)-->
+![](images/schedule.png)
 :::
 
 
-
 ## Next training
 
 
@@ -49,7 +45,7 @@ UPDATE IMAGE WITH WEEK 2 SCHEDULE
 
 - Handling missing data
 - Big data workflows and parallel computing
-- Building scientific websites with R and Shiny
+- GitHub Workflows
 - Synthesis presentations and next steps