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AGAT-v0.1.0

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@Juke34 Juke34 released this 17 Dec 20:49
· 463 commits to master since this release
  • Fix #6,#7,#8,#9,#10,#11
  • 5 new scripts:
    agat_sp_filter_feature_by_attribute_value.pl
    agat_sp_compare_two_annotations.pl
    agat_sp_compare_two_BUSCOs.pl
    agat_sp_sensitivity_specificity.pl
    agat_sp_filter_feature_by_attribute_value.pl (to replace maker_select_models_by_AED_score.pl from GAAS repo. It is standardised here that make it able to perform more advance tasks)
  • Modification of agat_sp_manage_IDs.pl to get shorter default ID naming. The previous style is still available with the --ensembl option
  • add tests
  • Improve/fix output path and names for some scripts
  • cosmetic changes: Clean code, improve help, factored some code (moved into utilities mod