eps output

scripts/fig1.R

@@ -81,6 +81,7 @@ orthodraw_full <- ggtree(orthotree, aes(color=group)) +
 ggsave('output/sup_fig8.pdf', orthodraw_full, device='pdf', dpi=300, width=12, height=12)
 ggsave('output/sup_fig8.png', orthodraw_full, device='png', dpi=300, width=12, height=12)
 ggsave('output/sup_fig8.tiff', orthodraw_full, device='tiff', dpi=300, width=12, height=12)
+ggsave('output/sup_fig8.eps', orthodraw_full, device=cairo_ps, dpi=300, width=12, height=12)
 
 # apthili virus -----------------------------------------------------------
 
@@ -229,6 +230,7 @@ apthilidraw_full
 ggsave('output/sup_fig7.pdf', apthilidraw_full, device='pdf',dpi=300, width=12, height=12)
 ggsave('output/sup_fig7.png', apthilidraw_full, device='png',dpi=300, width=12, height=12)
 ggsave('output/sup_fig7.tiff', apthilidraw_full, device='tiff',dpi=300, width=12, height=12)
+ggsave('output/sup_fig7.eps', apthilidraw_full, device=cairo_ps,dpi=300, width=12, height=12)
 
 # Apparli virus -----------------------------------------------------------
 # acc 2 name mappings
@@ -396,6 +398,7 @@ apparlidraw_full
 ggsave('output/sup_fig6.pdf', apparlidraw_full, device='pdf', dpi=300, width=12, height=12)
 ggsave('output/sup_fig6.png', apparlidraw_full, device='png', dpi=300, width=12, height=12)
 ggsave('output/sup_fig6.tiff', apparlidraw_full, device='tiff', dpi=300, width=12, height=12)
+ggsave('output/sup_fig6.eps', apparlidraw_full, device=cairo_ps, dpi=300, width=12, height=12)
 
 
 # BMLV --------------------------------------------------------------------
@@ -583,6 +586,7 @@ bmlvdraw_full
 ggsave('output/sup_fig5.pdf', bmlvdraw_full, device='pdf', dpi=300, width=12, height=12)
 ggsave('output/sup_fig5.png', bmlvdraw_full, device='png', dpi=300, width=12, height=12)
 ggsave('output/sup_fig5.tiff', bmlvdraw_full, device='tiff', dpi=300, width=12, height=12)
+ggsave('output/sup_fig5.eps', bmlvdraw_full, device=cairo_ps, dpi=300, width=12, height=12)
 
 # AMFV --------------------------------------------------------------------
 
@@ -759,6 +763,8 @@ amfvdraw_full
 ggsave('output/sup_fig4.pdf', amfvdraw_full, device='pdf', dpi=300, width=12, height=12)
 ggsave('output/sup_fig4.png', amfvdraw_full, device='png', dpi=300, width=12, height=12)
 ggsave('output/sup_fig4.tiff', amfvdraw_full, device='tiff', dpi=300, width=12, height=12)
+ggsave('output/sup_fig4.eps', amfvdraw_full, device=cairo_ps, dpi=300, width=12, height=12)
+
 # dwv - vdv ---------------------------------------------------------------
 
 vdvdwv.acc2name <- read.delim("data/trees/vdv_dwv.acc2name", header=FALSE)
@@ -875,10 +881,12 @@ vdvdraw_full
 ggsave('output/sup_fig3.pdf', vdvdraw_full, device='pdf',dpi=300, width=12, height=12)
 ggsave('output/sup_fig3.png', vdvdraw_full, device='png',dpi=300, width=12, height=12)
 ggsave('output/sup_fig3.tiff', vdvdraw_full, device='tiff',dpi=300, width=12, height=12)
+ggsave('output/sup_fig3.eps', vdvdraw_full, device=cairo_ps,dpi=300, width=12, height=12)
 
 # Combine -----------------------------------------------------------------
 
 testgrid <- grid.arrange(amfvdraw,bmlvdraw,apparlidraw,vdvdraw, apthilidraw ,orthodraw,nrow=3, ncol=2)
 ggsave("output/fig1.pdf",testgrid, device = "pdf", height=15,width=20, limitsize=FALSE)
 ggsave("output/fig1.png",testgrid, device = "png", height=15,width=20, limitsize=FALSE)
 ggsave("output/fig1.tiff",testgrid, device = "tiff", height=15,width=20, limitsize=FALSE)
+ggsave("output/fig1.eps",testgrid, device = cairo_ps, height=15,width=20, limitsize=FALSE)

scripts/fig2.py

@@ -277,3 +277,4 @@
     plt.savefig('output/fig2.pdf', dpi=300)
     plt.savefig('output/fig2.png', dpi=300)
     plt.savefig('output/fig2.tiff', dpi=300)
+    plt.savefig('output/fig2.eps', dpi=300)

scripts/fig3.py

@@ -288,3 +288,4 @@ def jitter(values,j):
     plt.savefig('output/fig3.pdf', dpi=300)
     plt.savefig('output/fig3.png', dpi=300)
     plt.savefig('output/fig3.tiff', dpi=300)
+    plt.savefig('output/fig3.eps', dpi=300)

scripts/fig4.py

@@ -150,4 +150,5 @@
                 arrowprops=dict(linewidth=3,arrowstyle="->", color='#79402E'))
     plt.savefig('output/fig4.pdf', dpi=300, bbox_inches='tight')
     plt.savefig('output/fig4.png', dpi=300, bbox_inches='tight')
-    plt.savefig('output/fig4.tiff', dpi=300, bbox_inches='tight')
+    plt.savefig('output/fig4.tiff', dpi=300, bbox_inches='tight')
+    plt.savefig('output/fig4.eps', dpi=300, bbox_inches='tight')

scripts/supfig1.py

@@ -30,3 +30,4 @@
     g.savefig('output/sup_fig1.pdf', dpi=300)
     g.savefig('output/sup_fig1.png', dpi=300)
     g.savefig('output/sup_fig1.tiff', dpi=300)
+    g.savefig('output/sup_fig1.eps', dpi=300)

scripts/supfig10.py

@@ -90,4 +90,5 @@
     plt.tight_layout()
     plt.savefig('output/sup_fig10.pdf', dpi=300)
     plt.savefig('output/sup_fig10.png', dpi=300)
-    plt.savefig('output/sup_fig10.tiff', dpi=300)
+    plt.savefig('output/sup_fig10.tiff', dpi=300)
+    plt.savefig('output/sup_fig10.eps', dpi=300)

scripts/supfig11.py

@@ -78,3 +78,4 @@
     g.figure.savefig('output/sup_fig11.pdf', dpi=300)
     g.figure.savefig('output/sup_fig11.png', dpi=300)
     g.figure.savefig('output/sup_fig11.tiff', dpi=300)
+    g.figure.savefig('output/sup_fig11.eps', dpi=300)

scripts/supfig2.py

@@ -31,4 +31,5 @@
         axix+=1
     plt.savefig('output/sup_fig2.pdf', dpi=300)
     plt.savefig('output/sup_fig2.png', dpi=300)
-    plt.savefig('output/sup_fig2.tiff', dpi=300)
+    plt.savefig('output/sup_fig2.tiff', dpi=300)
+    plt.savefig('output/sup_fig2.eps', dpi=300)

scripts/supfig9.py

@@ -232,4 +232,4 @@
     plt.savefig('output/sup_fig9.pdf', dpi=300)
     plt.savefig('output/sup_fig9.png', dpi=300)
     plt.savefig('output/sup_fig9.tiff', dpi=300)
-
+    plt.savefig('output/sup_fig9.eps', dpi=300)