Merge pull request #328 from MC-kit/devel

enable python3.13

.github/workflows/labeler.yml

@@ -1,5 +1,9 @@
 name: Create Repository Labels
 
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 on:
   push:
     branches:
@@ -10,30 +14,26 @@ on:
       - .github/labels.yml
       - .github/workflows/labeler.yml
   pull_request:
-    branches:
-      - main
-      - master
-      - devel
     paths:
       - .github/labels.yaml
       - .github/workflows/labeler.yml
   schedule:
     - cron: "0 0 * * TUE"
 
 jobs:
-  labels:
+  labeler:
     name: Sycnchronize repository labels
     runs-on: ubuntu-latest
     steps:
-      - name: Check out the repository
+      - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Sync GitHub Issue Labels
+      - name: Run labeler
         uses: crazy-max/ghaction-github-labeler@v5
         with:
           github-token: ${{ secrets.MCKIT_GITHUB_TOKEN }}
           skip-delete: true
-          dry-run: ${{ github.event_name != 'pull_request' }}
+          dry-run: ${{ github.event_name == 'pull_request' }}
           exclude: |
             help*
             *issue

.github/workflows/release.yml

@@ -1,7 +1,7 @@
 name: Release
 
 env:
-  PYTHON_VERSION: '3.11'
+  PYTHON_VERSION: '3.13'
 
 on:
   workflow_dispatch:

.github/workflows/tests.yml

@@ -38,7 +38,7 @@ concurrency:
   cancel-in-progress: true
 
 env:
-  DEFAULT_PYTHON: "3.12"
+  DEFAULT_PYTHON: "3.13"
 
 jobs:
 
@@ -142,7 +142,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ ubuntu-latest, windows-latest ]
-        python-version: [ '3.10', '3.11', '3.12' ]
+        python-version: [ '3.10', '3.11', '3.12', '3.13' ]
 
     steps:
 
@@ -191,6 +191,8 @@ jobs:
         with:
           name: coverage-data-${{ runner.os }}-${{ matrix.python-version }}
           path: ".coverage.*"
+          include-hidden-files: true
+          if-no-files-found: error
 
   coverage:
     runs-on: ubuntu-latest

.pre-commit-config.yaml

@@ -15,18 +15,20 @@
 #     https://github.com/pre-commit/pre-commit  for more information
 #     https://pre-commit.com/hooks.html         for more hooks
 default_language_version:
-  python: python3.12
+  python: python3.13
 
 repos:
 
   # Standard hooks
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: "v4.5.0"
+    rev: "v5.0.0"
     hooks:
       - id: check-added-large-files
+      - id: check-ast
       - id: check-case-conflict
       - id: check-executables-have-shebangs
       - id: check-json
+        exclude: notebooks
       - id: check-merge-conflict
       - id: check-shebang-scripts-are-executable
         exclude: notebooks  # jupytext creates python scripts with shebangs but without permissions
@@ -37,19 +39,28 @@ repos:
       - id: end-of-file-fixer
         exclude: data|.ipynb$|^\.
       - id: name-tests-test
+        exclude: common.py|help*.*py
         args:
           - --pytest-test-first
       - id: mixed-line-ending
+      - id: pretty-format-json
+        args: [--autofix, --no-ensure-ascii, --no-sort-keys]
+        exclude: data|\.ipynb$
       - id: requirements-txt-fixer
       - id: trailing-whitespace
-        exclude: data|.ipynb$
+        exclude: data|\.ipynb$
 
   # Changes tabs to spaces
   - repo: https://github.com/Lucas-C/pre-commit-hooks
-    rev: "v1.5.4"
+    rev: "v1.5.5"
     hooks:
       - id: remove-tabs
 
+  - repo: https://github.com/pre-commit/pre-commit
+    rev: v4.0.1
+    hooks:
+      - id: validate_manifest
+
   # Format doc strings
   - repo: https://github.com/DanielNoord/pydocstringformatter
     rev: "v0.7.3"
@@ -68,33 +79,30 @@ repos:
           - --py310-plus
         language: system
         types: [ python ]
-        stages: [ manual ]
 
-      # Security check
-      - id: bandit
-        name: bandit
-        entry: bandit
-        args: ["-c", "pyproject.toml"]
-        language: system
-        types: [ python ]
-        exclude: ^notebooks|^extern
-        stages: [ manual ]
+      # # Format Python code
+      # - id: ruff
+      #   name: ruff-format
+      #   entry: ruff format --force-exclude --config pyproject.toml
+      #   language: system
+      #   types: [ python ]
+      #   exclude: ^notebooks|^extern
+      #
+      # # Lint and fix Python code (including import sort)
+      # - id: ruff
+      #   name: ruff
+      #   entry: ruff check --force-exclude --fix --config pyproject.toml
+      #   language: system
+      #   types: [ python ]
+      #   exclude: ^notebooks|^extern
 
-      # Lint and fix Python code (including import sort)
-      - id: ruff
-        name: ruff
-        entry: ruff check --force-exclude --fix --config pyproject.toml
-        language: system
-        types: [ python ]
-        exclude: ^notebooks|^extern
-
-      # Format Python code
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.7.0
+    hooks:
       - id: ruff
-        name: ruff-format
-        entry: ruff format --force-exclude --config pyproject.toml
-        language: system
-        types: [ python ]
         exclude: ^notebooks|^extern
+      - id: ruff-format
+        exclude: ^notebooks|^extern|ipynb$
 
 
   # CMake formatting
@@ -113,9 +121,19 @@ repos:
       - id: clang-format
         types_or: [ c++, c, cuda ]
 
+  - repo: https://github.com/python-poetry/poetry
+    rev: "1.8.0"
+    hooks:
+    - id: poetry-check
+    - id: poetry-lock
+      stages: [ manual ]
+    - id: poetry-install
+      stages: [ manual ]
+
   # Check for common shell mistakes
   - repo: https://github.com/shellcheck-py/shellcheck-py
-    rev: "v0.9.0.6"
+    rev: "v0.10.0.1"
     hooks:
       - id: shellcheck
+        args: [ --external-sources ]
         stages: [ manual ]

noxfile.py

@@ -20,6 +20,7 @@
 
 nox.options.sessions = (
     "pre-commit",
+    "ruff-format",
     "ruff",
     "tests",
     "docs-build",
@@ -58,8 +59,8 @@ def find_my_name() -> str:
 package: Final[str] = find_my_name()
 locations: Final[tuple[str, ...]] = f"src/{package}", "tests", "./noxfile.py", "docs/source/conf.py"
 
-supported_pythons: Final[tuple[str, ...]] = "3.10", "3.11", "3.12"
-default_python: Final[str] = "3.12"
+supported_pythons: Final[tuple[str, ...]] = "3.10", "3.11", "3.12", "3.13"
+default_python: Final[str] = "3.13"
 
 
 def _update_hook(hook: Path, virtualenv: str, s: Session) -> None:
@@ -150,14 +151,6 @@ def typeguard(s: Session) -> None:
     s.run("pytest", "--typeguard-packages=src", *s.posargs, external=True)
 
 
-@session
-def lint(s: Session) -> None:
-    """Lint using flake8."""
-    s.run("poetry", "install", "--no-root", "--only", "flake8", external=True)
-    args = s.posargs or locations
-    s.run("flake8", *args)
-
-
 @session
 def mypy(s: Session) -> None:
     """Type-check using mypy."""