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Integrated AlphaLink2 with AlphaPulldown #200

Merged
merged 42 commits into from
Nov 9, 2023
Merged

Integrated AlphaLink2 with AlphaPulldown #200

merged 42 commits into from
Nov 9, 2023

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dingquanyu
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Geoffrey Yu and others added 30 commits October 13, 2023 12:56
@dingquanyu
update codes
48efe26
@dingquanyu
now make the model structure of unifold flexible with a flag
2a26316
@dingquanyu
fixed the flags error
a8eec28
@dingquanyu
update gitmodules with unifold submodule
53b5a76
@dingquanyu
start working on adding crosslink input
38e5f1c
@dingquanyu
added unifold submodule codes
39a60a3
@dingquanyu
added unittest for preparing crosslink infor
5e98ed8
@dingquanyu
update test of process_xl_input functions
a69c775
@dingquanyu
finished testing xl input preparation
eebac83
@dingquanyu
start working on alphalink inference codes
4a33322
@dingquanyu
finished adding alphalink inference codes
2811bf4
@dingquanyu
Merge pull request #193 from KosinskiLab/main
8406642 
Merge updated main README to add-unifold branch
@dingquanyu
update run_multimer_jobs
855619c
@dingquanyu
update unifold submodule
572f9cc
@dingquanyu
unittest for cross link input and inference with crosslink data
f0dc199
@dingquanyu
update alphafold, unifold submodules
55608b1
@dingquanyu
remove unnecessary debug statements
fbafbd6
@dingquanyu
update unifold submodule
78c012d
@dingquanyu
update github actions
15572fc
@dingquanyu
update github actions
479b7d1
@dingquanyu
update github actions
636157f
@dingquanyu
added conda shell.bash hook before testing imports
bda5aff
@dingquanyu
update github actions
beafd98
@dingquanyu
update github actions
8bd7f5a
@dingquanyu
update github actions
7d522a7
@dingquanyu
update github actions
ad75e32
@dingquanyu
update github actions
b569722
@dingquanyu
add pip installations
b14baea
@dingquanyu
update github actions
59caffd
@dingquanyu
update github actions
ff4fbc7
@dingquanyu dingquanyu merged commit ed7218b into main Nov 9, 2023
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@dingquanyu