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Update README.md (CCP4 installation fix)
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gilep authored and DimaMolod committed Oct 15, 2024
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Showing 1 changed file with 5 additions and 11 deletions.
16 changes: 5 additions & 11 deletions README.md
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Expand Up @@ -281,16 +281,16 @@ cp /lib/* <writable_image_dir>/software/lib64/
singularity build <new_image.sif> <writable_image_dir>
```

Then open `AlphaPulldownSnakemake/config/config.yaml` in a text editor and change the path to the analysis container to:
## 2. Configuration

Adjust `config/config.yaml` for your particular use case.

If you want to use CCP4 for analysis, open `config/config.yaml` in a text editor and change the path to the analysis container to:

```yaml
analysis_container : "/path/to/new_image.sif"
```
## 2. Configuration
Adjust `config/config.yaml` for your particular use case.

**input_files**
This variable holds the path to your sample sheet, where each line corresponds to a folding job. For this pipeline we use the following format specification:
Expand Down Expand Up @@ -460,12 +460,6 @@ cp /lib/* <writable_image_dir>/software/lib64/
singularity build <new_image.sif> <writable_image_dir>
```

Then open `AlphaPulldownSnakemake/config/config.yaml` in a text editor and change the path to the analysis container to:

```yaml
analysis_container : "/path/to/new_image.sif"
```
### 0.4. Installation for cross-link input data by [AlphaLink2](https://github.com/Rappsilber-Laboratory/AlphaLink2/tree/main) (optional!)

$\text{\color{red}Update the installation manual after resolving the dependency conflict.}$
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