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Merge pull request #527 from PaulHax/export-segment-group
Segment group file format selection for serialization
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| # Configuration JSON File | ||
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| By loading a JSON file, you can set VolView's: | ||
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| - Starting view layout (Axial Only, 3D Primary, etc). | ||
| - Labels for tools | ||
| - Visibility of Sample Data section | ||
| - Keyboard shortcuts | ||
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| ## Starting view layout | ||
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| The `activeLayout` key has options (Axial Only, 3D Primary, etc.) defined in `config.ts` | ||
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| ```json | ||
| { | ||
| "layout": { | ||
| "activeLayout": "Axial Only" | ||
| } | ||
| } | ||
| ``` | ||
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| ## Labels for tools | ||
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| Each tool type (Rectangle, Polygon, etc.) can have tool specific labels. To share labels | ||
| across tools, define the `defaultLabels` key and don't provide labels for a tool that | ||
| should use the default labels. | ||
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| ```json | ||
| { | ||
| "labels": { | ||
| "defaultLabels": { | ||
| "lesion": { "color": "#ff0000" }, | ||
| "tumor": { "color": "green", "strokeWidth": 3 } | ||
| } | ||
| } | ||
| } | ||
| ``` | ||
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| ## Segment Group File Format | ||
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| The `segmentGroupSaveFormat` key specifies the file extension of the segment group images | ||
| VolView will include in the volview.zip file. | ||
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| ```json | ||
| { | ||
| "io": { | ||
| "segmentGroupSaveFormat": "nii" | ||
| } | ||
| } | ||
| ``` | ||
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| These are the supported file formats: | ||
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| hdf5, iwi.cbor, mha, nii, nii.gz, nrrd, vtk | ||
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| ## Keyboard Shortcuts | ||
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| Configure the keys to activate tools, change selected labels, and more. | ||
| All [shortcut actions](https://github.com/Kitware/VolView/blob/main/src/constants.ts#L53) are under the `ACTIONS` variable. | ||
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| To configure a key for an action, add its action name and the key(s) under the `shortcuts` section. For key combinations, use `+` like `Ctrl+f`. | ||
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| ```json | ||
| { | ||
| "shortcuts": { | ||
| "polygon": "Ctrl+p", | ||
| "showKeyboardShortcuts": "t" | ||
| } | ||
| } | ||
| ``` | ||
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| ## Visibility of Sample Data section | ||
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| Simplify the data browser by hiding the Sample Data expandable section. | ||
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| ```json | ||
| { | ||
| "dataBrowser": { | ||
| "hideSampleData": false | ||
| } | ||
| } | ||
| ``` | ||
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| ## Example JSON: | ||
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| ```json | ||
| { | ||
| "labels": { | ||
| "defaultLabels": { | ||
| "lesion": { "color": "#ff0000" }, | ||
| "tumor": { "color": "green", "strokeWidth": 3 } | ||
| } | ||
| }, | ||
| "layout": { | ||
| "activeLayout": "Axial Only" | ||
| } | ||
| } | ||
| ``` | ||
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| ## All options: | ||
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| ```json | ||
| { | ||
| "labels": { | ||
| "defaultLabels": { | ||
| "lesion": { "color": "#ff0000" }, | ||
| "tumor": { "color": "green", "strokeWidth": 3 }, | ||
| "innocuous": { "color": "white" } | ||
| }, | ||
| "rulerLabels": { | ||
| "big": { "color": "#ff0000" }, | ||
| "small": { "color": "white" } | ||
| }, | ||
| "rectangleLabels": { | ||
| "red": { "color": "#ff0000", "fillColor": "transparent" }, | ||
| "green": { "color": "green", "fillColor": "transparent" }, | ||
| "white-yellow-fill": { | ||
| "color": "white", | ||
| "fillColor": "#00ff0030" | ||
| } | ||
| }, | ||
| "polygonLabels": { | ||
| "poly1": { "color": "#ff0000" }, | ||
| "poly2Label": { "color": "green" } | ||
| } | ||
| }, | ||
| "layout": { | ||
| "activeLayout": "Axial Only" | ||
| }, | ||
| "dataBrowser": { | ||
| "hideSampleData": false | ||
| }, | ||
| "shortcuts": { | ||
| "polygon": "Ctrl+p", | ||
| "showKeyboardShortcuts": "t" | ||
| }, | ||
| "io": { | ||
| "segmentGroupSaveFormat": "nrrd" | ||
| } | ||
| } | ||
| ``` |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,12 +1,13 @@ | ||
| doc: | ||
| introduction: | ||
| introduction: | ||
| what_is_volview: index.html | ||
| quick_start_guide: quick_start_guide.html | ||
| details: | ||
| details: | ||
| welcome_screen: welcome_screen.html | ||
| loading_data: loading_data.html | ||
| toolbar: toolbar.html | ||
| mouse_controls: mouse_controls.html | ||
| rendering: rendering.html | ||
| state_files: state_files.html | ||
| server: server.html | ||
| configuration_file: configuration_file.html |
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