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| Original file line number | Diff line number | Diff line change |
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| #Adds the option to go to eg. http://localhost:8080/actuator/health for seeing the running configuration | ||
| #see https://docs.spring.io/spring-boot/docs/current/reference/html/actuator.html#actuator.endpoints | ||
| management: | ||
| endpoints: | ||
| web: | ||
| exposure: | ||
| include: "health,prometheus" | ||
| spring: | ||
| main: | ||
| allow-circular-references: true | ||
| #allow-bean-definition-overriding: true | ||
| flyway: | ||
| enabled: false | ||
| check-location: false | ||
| baselineOnMigrate: true | ||
| datasource: | ||
| url: 'jdbc:postgresql://database:5432/clinlims?currentSchema=clinlims' | ||
| #url: jdbc:h2:mem:test_mem | ||
| username: clinlims | ||
| password: clinlims | ||
|
|
||
| driverClassName: org.postgresql.Driver | ||
| max-active: 15 | ||
|
|
||
| # database connection pool size | ||
| hikari: | ||
| maximum-pool-size: 10 | ||
| jpa: | ||
| properties: | ||
| hibernate.format_sql: false | ||
| hibernate.show_sql: false | ||
|
|
||
| #Hibernate dialect is automatically detected except Postgres and H2. | ||
| #If using H2, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect | ||
| #If using postgres, then supply the value of ca.uhn.fhir.jpa.model.dialect.HapiFhirPostgres94Dialect | ||
| hibernate.dialect: org.hibernate.dialect.PostgreSQLDialect | ||
| hibernate.hbm2ddl.auto: update | ||
| # hibernate.jdbc.batch_size: 20 | ||
| # hibernate.cache.use_query_cache: false | ||
| # hibernate.cache.use_second_level_cache: false | ||
| # hibernate.cache.use_structured_entries: false | ||
| # hibernate.cache.use_minimal_puts: false | ||
|
|
||
| ### These settings will enable fulltext search with lucene or elastic | ||
| hibernate.search.enabled: true | ||
| ### lucene parameters | ||
| # hibernate.search.backend.type: lucene | ||
| # hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiLuceneAnalysisConfigurer | ||
| # hibernate.search.backend.directory.type: local-filesystem | ||
| # hibernate.search.backend.directory.root: target/lucenefiles | ||
| # hibernate.search.backend.lucene_version: lucene_current | ||
| ### elastic parameters ===> see also elasticsearch section below <=== | ||
| # hibernate.search.backend.type: elasticsearch | ||
| # hibernate.search.backend.analysis.configurer: ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers$HapiElasticAnalysisConfigurer | ||
| hapi: | ||
| fhir: | ||
|
|
||
| ### This enables the swagger-ui at /fhir/swagger-ui/index.html as well as the /fhir/api-docs (see https://hapifhir.io/hapi-fhir/docs/server_plain/openapi.html) | ||
| openapi_enabled: true | ||
| ### This is the FHIR version. Choose between, DSTU2, DSTU3, R4 or R5 | ||
| fhir_version: R4 | ||
| ### This flag when enabled to true, will avail evaluate measure operations from CR Module. | ||
| ### Flag is false by default, can be passed as command line argument to override. | ||
| cr_enabled: "${CR_ENABLED: false}" | ||
| ### enable to use the ApacheProxyAddressStrategy which uses X-Forwarded-* headers | ||
| ### to determine the FHIR server address | ||
| # use_apache_address_strategy: false | ||
| ### forces the use of the https:// protocol for the returned server address. | ||
| ### alternatively, it may be set using the X-Forwarded-Proto header. | ||
| # use_apache_address_strategy_https: false | ||
| ### enables the server to host content like HTML, css, etc. under the url pattern of /static/** | ||
| ### the deepest folder level will be used. E.g. - if you put file:/foo/bar/bazz as value then the files are resolved under /static/bazz/** | ||
| #staticLocation: file:/foo/bar/bazz | ||
| ### enable to set the Server URL | ||
| server_address: https://fhir.openelis.org:8443/fhir/ | ||
| # defer_indexing_for_codesystems_of_size: 101 | ||
| # install_transitive_ig_dependencies: true | ||
| ### tells the server whether to attempt to load IG resources that are already present | ||
| # reload_existing_implementationGuides : false | ||
| # implementationguides: | ||
| ### example from registry (packages.fhir.org) | ||
| # swiss: | ||
| # name: swiss.mednet.fhir | ||
| # version: 0.8.0 | ||
| # example not from registry | ||
| # ips_1_0_0: | ||
| # url: https://build.fhir.org/ig/HL7/fhir-ips/package.tgz | ||
| # name: hl7.fhir.uv.ips | ||
| # version: 1.0.0 | ||
| # supported_resource_types: | ||
| # - Patient | ||
| # - Observation | ||
| ################################################## | ||
| # Allowed Bundle Types for persistence (defaults are: COLLECTION,DOCUMENT,MESSAGE) | ||
| ################################################## | ||
| # allowed_bundle_types: COLLECTION,DOCUMENT,MESSAGE,TRANSACTION,TRANSACTIONRESPONSE,BATCH,BATCHRESPONSE,HISTORY,SEARCHSET | ||
| # allow_cascading_deletes: true | ||
| # allow_contains_searches: true | ||
| allow_external_references: true | ||
| # allow_multiple_delete: true | ||
| # allow_override_default_search_params: true | ||
| auto_create_placeholder_reference_targets: true | ||
| ### tells the server to automatically append the current version of the target resource to references at these paths | ||
| # auto_version_reference_at_paths: Device.patient, Device.location, Device.parent, DeviceMetric.parent, DeviceMetric.source, Observation.device, Observation.subject | ||
| # cr_enabled: true | ||
| # ips_enabled: false | ||
| # default_encoding: JSON | ||
| default_pretty_print: false | ||
| default_page_size: 100 | ||
| # delete_expunge_enabled: true | ||
| # enable_repository_validating_interceptor: true | ||
| # enable_index_missing_fields: false | ||
| # enable_index_of_type: true | ||
| # enable_index_contained_resource: false | ||
| ### !!Extended Lucene/Elasticsearch Indexing is still a experimental feature, expect some features (e.g. _total=accurate) to not work as expected!! | ||
| ### more information here: https://hapifhir.io/hapi-fhir/docs/server_jpa/elastic.html | ||
| advanced_lucene_indexing: false | ||
| bulk_export_enabled: false | ||
| bulk_import_enabled: false | ||
| # enforce_referential_integrity_on_delete: false | ||
| # This is an experimental feature, and does not fully support _total and other FHIR features. | ||
| # enforce_referential_integrity_on_delete: false | ||
| # enforce_referential_integrity_on_write: false | ||
| # etag_support_enabled: true | ||
| # expunge_enabled: true | ||
| # client_id_strategy: ALPHANUMERIC | ||
| fhirpath_interceptor_enabled: false | ||
| # filter_search_enabled: true | ||
| # graphql_enabled: true | ||
| narrative_enabled: false | ||
| # mdm_enabled: true | ||
| # local_base_urls: | ||
| # - https://hapi.fhir.org/baseR4 | ||
| mdm_enabled: false | ||
| # partitioning: | ||
| # allow_references_across_partitions: false | ||
| # partitioning_include_in_search_hashes: false | ||
| cors: | ||
| allow_Credentials: true | ||
| # These are allowed_origin patterns, see: https://docs.spring.io/spring-framework/docs/current/javadoc-api/org/springframework/web/cors/CorsConfiguration.html#setAllowedOriginPatterns-java.util.List- | ||
| allowed_origin: | ||
| - '*' | ||
|
|
||
| # Search coordinator thread pool sizes | ||
| search-coord-core-pool-size: 20 | ||
| search-coord-max-pool-size: 100 | ||
| search-coord-queue-capacity: 200 | ||
|
|
||
| # comma-separated package names, will be @ComponentScan'ed by Spring to allow for creating custom Spring beans | ||
| #custom-bean-packages: | ||
|
|
||
| # comma-separated list of fully qualified interceptor classes. | ||
| # classes listed here will be fetched from the Spring context when combined with 'custom-bean-packages', | ||
| # or will be instantiated via reflection using an no-arg contructor; then registered with the server | ||
| #custom-interceptor-classes: | ||
|
|
||
| # Threadpool size for BATCH'ed GETs in a bundle. | ||
| # bundle_batch_pool_size: 10 | ||
| # bundle_batch_pool_max_size: 50 | ||
|
|
||
| # logger: | ||
| # error_format: 'ERROR - ${requestVerb} ${requestUrl}' | ||
| # format: >- | ||
| # Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] | ||
| # Operation[${operationType} ${operationName} ${idOrResourceName}] | ||
| # UA[${requestHeader.user-agent}] Params[${requestParameters}] | ||
| # ResponseEncoding[${responseEncodingNoDefault}] | ||
| # log_exceptions: true | ||
| # name: fhirtest.access | ||
| # max_binary_size: 104857600 | ||
| max_page_size: 200 | ||
| retain_cached_searches_mins: 60 | ||
| reuse_cached_search_results_millis: 1 | ||
| tester: | ||
| home: | ||
| name: OE adjacent FHIR Store | ||
| server_address: 'https://fhir.openelis.org:8443/fhir/' | ||
| refuse_to_fetch_third_party_urls: false | ||
| fhir_version: R4 | ||
| # validation: | ||
| # requests_enabled: true | ||
| # responses_enabled: true | ||
| # binary_storage_enabled: true | ||
| inline_resource_storage_below_size: 4000 | ||
| # bulk_export_enabled: true | ||
| subscription: | ||
| resthook_enabled: true | ||
| # websocket_enabled: false | ||
| # email: | ||
| # from: [email protected] | ||
| # host: google.com | ||
| # port: | ||
| # username: | ||
| # password: | ||
| # auth: | ||
| # startTlsEnable: | ||
| # startTlsRequired: | ||
| # quitWait: | ||
| # lastn_enabled: true | ||
| # store_resource_in_lucene_index_enabled: true | ||
| ### This is configuration for normalized quantity search level default is 0 | ||
| ### 0: NORMALIZED_QUANTITY_SEARCH_NOT_SUPPORTED - default | ||
| ### 1: NORMALIZED_QUANTITY_STORAGE_SUPPORTED | ||
| ### 2: NORMALIZED_QUANTITY_SEARCH_SUPPORTED | ||
| # normalized_quantity_search_level: 2 | ||
| #elasticsearch: | ||
| # debug: | ||
| # pretty_print_json_log: false | ||
| # refresh_after_write: false | ||
| # enabled: false | ||
| # password: SomePassword | ||
| # required_index_status: YELLOW | ||
| # rest_url: 'localhost:9200' | ||
| # protocol: 'http' | ||
| # schema_management_strategy: CREATE |
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