First commit.

README.md

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+# homebrew-supportingsoftware
+
+Homebrew recipes for the supporting software required to compile or install fluidity on Mac OS X. Existing homebrew users should tap the repository with:
+
+`brew tap FluidityProject/supportingsoftware`
+
+A Fluidity installation should then be available with:
+
+`brew install fluidity`

fluidity.rb

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+
+class Fluidity < Formula
+  desc ""
+  homepage "http://FluidityProject.github.io"
+  url "https://github.com/FluidityProject/fluidity.git", :branch => "ElCapitanFixes"
+  sha256 ""
+  version "4.13"
+
+  depends_on :mpi => [:cc, :cxx, :f77, :f90]
+  depends_on :fortran
+  depends_on :x11
+  depends_on "FluidityProject/supportingsoftware/petsc-fluidity"
+  depends_on "FluidityProject/supportingsoftware/zoltan"
+  depends_on "python"
+  depends_on "numpy"
+  depends_on "udunits"
+  depends_on "gnu-sed"
+  depends_on "vtk5"
+  depends_on "judy"
+  depends_on "spatialindex"
+  depends_on "FluidityProject/supportingsoftware/libspud"
+
+  option "enable-2d-adaptivity", "Build and link libmba2 for 2d adaptivity"
+  option "enable-debug", "Build debug version"
+
+  keg_only "Lets test this first!"
+
+  fails_with :llvm 
+  fails_with :gcc_4_0
+
+  def oprefix(f)
+    Formula[f].opt_prefix
+  end
+
+  def install
+    # ENV.deparallelize  # if your formula fails when building in parallel
+
+    ENV["CPPFLAGS"] = "-I#{oprefix("origimbo/tools/zoltan")}/include -I#{oprefix("vtk5")}/include/vtk-5.10"
+    ENV["LDFLAGS"] = "-L#{oprefix("vtk5")}/lib/vtk-5.10 -lvtkIO -lvtkHybrid -lvtkGraphics -lvtkRendering -lvtkFiltering -lvtkCommon"
+
+    ENV["PETSC_DIR"] = "#{HOMEBREW_PREFIX}/opt/petsc-fluidity"
+
+    system "./configure", "--prefix=#{prefix}",
+                          "--with-libspud-root=#{HOMEBREW_PREFIX}",
+                          "--with-spatialindex-root=#{HOMEBREW_PREFIX}",
+                          "--with-judy=#{oprefix("judy")}/lib/libjudy.a"
+    system "make"
+    system "make", "install"
+  end
+
+end

libspud.rb

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+# Documentation: https://github.com/Homebrew/homebrew/blob/master/share/doc/homebrew/Formula-Cookbook.md
+#                http://www.rubydoc.info/github/Homebrew/homebrew/master/Formula
+# PLEASE REMOVE ALL GENERATED COMMENTS BEFORE SUBMITTING YOUR PULL REQUEST!
+
+class Libspud < Formula
+  desc ""
+  homepage ""
+  url "lp:spud", :using => :bzr
+  sha256 ""
+  version "1.1"
+
+  # depends_on "cmake" => :build
+  depends_on "libxml2"
+  depends_on "python"
+  depends_on "trang"
+  depends_on "pygtk" => "with-libglade"
+  depends_on :fortran
+
+  bottle do
+    root_url "https://github.com/FluidityProject/homebrew-supportingsoftware/releases/download/v1.0/" 
+    cellar :any_skip_relocation
+    sha256 "caec3fe5d64de3500520d86d8460aec1002dc284a42b1066b8e47d566701105d" => :mavericks
+  end
+
+  env :std
+
+  fails_with :llvm 
+
+  def install
+    # ENV.deparallelize  # if your formula fails when building in parallel
+
+    # Remove unrecognized options if warned by configure
+    system "./configure", "--prefix=#{prefix}"
+    system "make"
+    system "make", "install" # if this fails, try separate make/make install steps
+
+    inreplace "#{bin}/diamond", "/usr/share/diamond/gui/diamond.svg", "#{prefix}/share/diamond/gui/diamond.svg"
+
+  end
+
+  test do
+    system "true"
+  end
+end

petsc-fluidity.rb

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+# Documentation: https://github.com/Homebrew/homebrew/blob/master/share/doc/homebrew/Formula-Cookbook.md
+#                http://www.rubydoc.info/github/Homebrew/homebrew/master/Formula
+
+class PetscFluidity < Formula
+  desc ""
+  homepage ""
+  url "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-lite-3.6.3.tar.gz"
+  version "3.6.3-fluidity"
+  sha256 "2458956c876496f3c8160591324459be7c11f2e1ce09ad98347394c67a46d858"
+
+  depends_on "cmake" => :build
+  depends_on :x11 # if your formula requires any X11/XQuartz components
+  depends_on "hypre"
+  depends_on "metis"
+  depends_on "parmetis"
+  depends_on "scalapack"
+  depends_on "suite-sparse"
+  depends_on "mumps"
+  depends_on "hwloc"
+  depends_on "netcdf" => "with-fortran"
+  depends_on "hdf5" => "with-mpi"
+  depends_on "valgrind"
+  depends_on :mpi => [:cc, :cxx, :f77, :f90]
+  depends_on :fortran
+
+  bottle do
+    root_url "https://github.com/FluidityProject/homebrew-supportingsoftware/releases/download/v1.0/" 
+    sha256 "952c231f62acbf308fbe0f42cb42e17a72b2dcc79edeb6295f9c78cb2128dc3b" => :mavericks
+  end
+
+  keg_only "Don't conflict with default homebrew petsc installation."
+
+  fails_with :llvm 
+  fails_with :gcc_4_0
+
+  def oprefix(f)
+    Formula[f].opt_prefix
+  end
+
+
+
+  def install
+    ENV.deparallelize
+
+    ENV.delete "CC"
+    ENV.delete "CXX"
+    ENV.delete "F77"
+    ENV.delete "FC"
+
+    ENV["PETSC_DIR"] = Dir.getwd
+
+    system "./configure", "--with-shared-libraries=0",
+                          "CC=#{ENV["MPICC"]}",
+                          "CXX=#{ENV["MPICXX"]}",
+                          "FC=#{ENV["MPIF77"]}",
+                          "F77=#{ENV["MPIFC"]}",
+                          "--with-debugging=0",
+                          "--with-fortran-interfaces=1",
+                          "--download-blacs",
+                          "--with-hypre-dir=#{oprefix("hypre")}",
+                          "--download-ml",
+                          "--download-ctetgen",
+                          "--download-chaco",
+                          "--with-metis-dir=#{oprefix("metis")}",
+                          "--with-parmetis-dir=#{oprefix("parmetis")}",
+                          "--with-netcdf=1",
+                          "--with-netcdf-dir=#{oprefix("netcdf")}",
+                          "--with-hdf5",
+                          "--with-hdf5-dir=#{oprefix("hdf5")}",
+                          "--with-mumps-dir=#{oprefix("mumps")}/libexec",
+                          "--with-scalapack-dir=#{oprefix("scalapack")}",
+                          "--with-suitesparse-dir=#{oprefix("suite-sparse")}",
+                          "--with-scalar-type=real",
+                          "--with-hwloc-dir=#{oprefix("hwloc")}",
+                          "--prefix=#{prefix}"
+    system "make", "all"
+    system "make", "install"
+
+  end
+
+  test do
+    # `test do` will create, run in and delete a temporary directory.
+    #
+    # This test will fail and we won't accept that! It's enough to just replace
+    # "false" with the main program this formula installs, but it'd be nice if you
+    # were more thorough. Run the test with `brew test petsc-lite`. Options passed
+    # to `brew install` such as `--HEAD` also need to be provided to `brew test`.
+    #
+    # The installed folder is not in the path, so use the entire path to any
+    # executables being tested: `system "#{bin}/program", "do", "something"`.
+    system "false"
+  end
+end

transfig.rb

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+class Transfig < Formula
+  homepage 'http://www.xfig.org'
+  url 'https://downloads.sourceforge.net/mcj/transfig.3.2.5e.tar.gz'
+  version '3.2.5e'
+
+  depends_on 'homebrew/x11/imake' => :build
+  depends_on 'jpeg'
+  depends_on 'ghostscript'
+  depends_on :x11
+  depends_on 'gcc'
+
+  fails_with :clang do
+    cause "clang fails to process xfig's imake rules"
+  end
+  fails_with :llvm
+  fails_with :gcc_4_0
+
+  env :std
+
+  def install
+    # transfig does not like to execute makefiles in parallel
+    ENV.deparallelize
+
+    # Patch tranfig/Imakefile
+    inreplace "transfig/Imakefile", "XCOMM BINDIR = /usr/bin/X11",
+              "BINDIR = #{bin}\n"+     # set install dir for bin
+              "USRLIBDIR = #{lib}\n"  # set install dir for lib
+    inreplace "transfig/Imakefile", "XCOMM MANDIR = $(MANSOURCEPATH)$(MANSUFFIX)",
+              "MANDIR = #{man}$(MANSUFFIX)"
+    inreplace "transfig/Imakefile", "XCOMM USELATEX2E = -DLATEX2E",
+              "USELATEX2E = -DLATEX2E"
+
+    # Patch fig2dev/Imakefile
+    inreplace "fig2dev/Imakefile", "XCOMM BINDIR = /usr/bin/X11",
+              "BINDIR = #{bin}\n"+     # set install dir for bin
+              "USRLIBDIR = #{lib}\n"  # set install dir for lib
+    inreplace "fig2dev/Imakefile", "XCOMM MANDIR = $(MANSOURCEPATH)$(MANSUFFIX)",
+              "MANDIR = #{man}$(MANSUFFIX)"
+    inreplace "fig2dev/Imakefile", "XFIGLIBDIR =	/usr/local/lib/X11/xfig",
+              "XFIGLIBDIR = #{share}"
+    inreplace "fig2dev/Imakefile","XCOMM USEINLINE = -DUSE_INLINE",
+              "USEINLINE = -DUSE_INLINE"
+    inreplace "fig2dev/Imakefile", "RGB = $(LIBDIR)/rgb.txt", "RGB = #{MacOS::X11.share}/X11/rgb.txt"
+    inreplace "fig2dev/Imakefile", "PNGINC = -I/usr/include/X11","PNGINC = -I#{MacOS::X11.include}"
+    inreplace "fig2dev/Imakefile", "PNGLIBDIR = $(USRLIBDIR)","PNGLIBDIR = #{MacOS::X11.lib}"
+    inreplace "fig2dev/Imakefile", "ZLIBDIR = $(USRLIBDIR)", "ZLIBDIR = /usr/lib"
+    inreplace "fig2dev/Imakefile", "XPMLIBDIR = $(USRLIBDIR)", "XPMLIBDIR = #{MacOS::X11.lib}"
+    inreplace "fig2dev/Imakefile", "XPMINC = -I/usr/include/X11", "XPMINC = -I#{MacOS::X11.include}/X11"
+    inreplace "fig2dev/Imakefile", "XCOMM DDA4 = -DA4", "DDA4 = -DA4"
+    inreplace "fig2dev/Imakefile", "FIG2DEV_LIBDIR = /usr/local/lib/fig2dev",
+              "FIG2DEV_LIBDIR = #{lib}/fig2dev"
+
+    # generate Makefiles
+    system "make clean"
+    system "xmkmf"
+    system "make Makefiles"
+
+    # build everything
+    system "make", "CC=#{ENV["CC"]}", "CXX=#{ENV["CXX"]}", 'CCOPTIONS=""'
+
+    # install everything
+    system "make install"
+    system "make install.man"
+
+  end
+
+  test do
+
+    system "echo hello"
+
+  end
+
+end

zoltan.rb

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+class Zoltan < Formula
+  homepage "http://www.cs.sandia.gov/Zoltan"
+  url "http://www.cs.sandia.gov/~kddevin/Zoltan_Distributions/zoltan_distrib_v3.81.tar.gz"
+  sha256 "9d6f2f9e2b37456cab7fe6714d51cd6d613374e915e6cc9f7fddcd72e3f38780"
+
+  option "without-check", "Skip build-time tests (not recommended)"
+
+  depends_on 'parmetis'
+  depends_on :fortran
+
+  mpilang = [:cc, :cxx, :f90]
+  depends_on :mpi => mpilang
+
+  bottle do
+   root_url "https://github.com/FluidityProject/homebrew-supportingsoftware/releases/download/v1.0/" 
+   sha256 "7ecf099174c6e0687921605777f2a4c666aa83a1f8e8970678156f2dcc8eae90" => :mavericks
+  end
+
+
+  fails_with :llvm 
+  fails_with :gcc_4_0
+
+  ENV["OMPI_FC"] = ENV["FC"]
+
+  def oprefix(f)
+    Formula[f].opt_prefix
+  end
+
+  def install
+    ENV.deparallelize
+
+    args = [
+      "--prefix=#{prefix}",
+      "CC=#{ENV["MPICC"]}",
+      "CXX=#{ENV["MPICXX"]}",
+    ]
+    args << "--with-parmetis" 
+    args << "--enable-zoltan-cppdriver"
+    args << "--enable-mpi"
+    args << "--with-mpi-compilers=yes"
+    args << "--with-gnumake"
+    args << "--enable-zoltan-cppdriver"
+    args << "--disable-examples"
+    args << "--with-parmetis-libdir=#{oprefix("parmetis")}/lib/"
+    args << "--with-parmetis-incdir=#{oprefix("parmetis")}/include"
+    args << "--enable-f90interface"
+    args << "FC=#{ENV["MPIFC"]}" 
+
+    mkdir "zoltan-build" do
+      system "../configure", *args
+      system "make", "everything"
+      system "make", "check" if build.with? "check"
+      system "make", "install"
+    end
+  end
+end