docs update

_sources/installing/index.rst.txt

@@ -120,6 +120,7 @@ GTDB-Tk reference data
 GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchived:
 
 For full package:
+^^^^^^^^^^^^^^^^^
 
 .. code-block:: bash
 
@@ -128,6 +129,7 @@ For full package:
     tar xvzf gtdbtk_data.tar.gz
 
 For split package:
+^^^^^^^^^^^^^^^^^^
 
 To create an archive from the GTDB-Tk release data parts:
 

installing/index.html

@@ -127,7 +127,11 @@
 <li class="toctree-l2"><a class="reference internal" href="#hardware-requirements">Hardware requirements</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#python-libraries">Python libraries</a></li>
 <li class="toctree-l2"><a class="reference internal" href="#third-party-software">Third-party software</a></li>
-<li class="toctree-l2"><a class="reference internal" href="#gtdb-tk-reference-data">GTDB-Tk reference data</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#gtdb-tk-reference-data">GTDB-Tk reference data</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="#for-full-package">For full package:</a></li>
+<li class="toctree-l3"><a class="reference internal" href="#for-split-package">For split package:</a></li>
+</ul>
+</li>
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="../faq.html">FAQ</a></li>
@@ -369,13 +373,16 @@ <h2>Python libraries<a class="headerlink" href="#python-libraries" title="Permal
 <div class="section" id="gtdb-tk-reference-data">
 <span id="installing-gtdbtk-reference-data"></span><h2>GTDB-Tk reference data<a class="headerlink" href="#gtdb-tk-reference-data" title="Permalink to this headline">¶</a></h2>
 <p>GTDB-Tk requires ~110G of external data that needs to be downloaded and unarchived:</p>
-<p>For full package:</p>
+<div class="section" id="for-full-package">
+<h3>For full package:<a class="headerlink" href="#for-full-package" title="Permalink to this headline">¶</a></h3>
 <div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>wget<span class="w"> </span>https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz
 wget<span class="w"> </span>https://data.gtdb.ecogenomic.org/releases/latest/auxillary_files/gtdbtk_package/full_package/gtdbtk_data.tar.gz<span class="w"> </span><span class="o">(</span><span class="w"> </span>mirror<span class="w"> </span><span class="k">for</span><span class="w"> </span>Australia<span class="o">)</span>
 tar<span class="w"> </span>xvzf<span class="w"> </span>gtdbtk_data.tar.gz
 </pre></div>
 </div>
-<p>For split package:</p>
+</div>
+<div class="section" id="for-split-package">
+<h3>For split package:<a class="headerlink" href="#for-split-package" title="Permalink to this headline">¶</a></h3>
 <p>To create an archive from the GTDB-Tk release data parts:</p>
 <ol class="arabic simple">
 <li><p>Ensure all parts of the GTDB-Tk release data are in the same directory.</p></li>
@@ -459,6 +466,7 @@ <h2>Python libraries<a class="headerlink" href="#python-libraries" title="Permal
 </tbody>
 </table>
 </div>
+</div>
 </div>