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Revise 'umbilical hernia' and omphalocele mappings
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Also contacted UMLS to fix incorrect conflation of these terms
in UMLS and MeSH.

Prompted by #1344
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@allenbaron
allenbaron committed Jun 28, 2024
1 parent a4e64ae commit 6ab1b75
Showing 1 changed file with 21 additions and 11 deletions.
32 changes: 21 additions & 11 deletions src/ontology/doid-edit.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -32539,18 +32539,22 @@ SubClassOf(obo:DOID_0060320 obo:DOID_5295)
AnnotationAssertion(Annotation(dc:type obo:ECO_0007637) Annotation(dc:type obo:ECO_0007638) Annotation(oboInOwl:hasDbXref "url:http://www.mayoclinic.org/diseases-conditions/umbilical-hernia/basics/definition/con-20025630") Annotation(oboInOwl:hasDbXref "url:https://en.wikipedia.org/wiki/Umbilical_hernia") obo:IAO_0000115 obo:DOID_0060321 "A intestinal disease characterized by the protrusion by part of the intestine though an opening in the abdominal muscles."@en)
AnnotationAssertion(oboInOwl:created_by obo:DOID_0060321 "emitraka")
AnnotationAssertion(oboInOwl:creation_date obo:DOID_0060321 "2015-02-25T15:58:35Z")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "ICD10CM:Q79.2")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "ICD9CM:756.72")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "MESH:D006554")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "NCI:C98997")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "ICD10CM:K42")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "ICD9CM:553.1")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "NCI:C118375")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "SNOMEDCT_US_2023_03_01:49324006")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "SNOMEDCT_US_2023_03_01:5867007")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "UMLS_CUI:C0795690")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "UMLS_CUI:C1306503")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060321 "UMLS_CUI:C0019322")
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0060321 "disease_ontology")
AnnotationAssertion(oboInOwl:id obo:DOID_0060321 "DOID:0060321")
AnnotationAssertion(oboInOwl:inSubset obo:DOID_0060321 doid:NCIthesaurus)
AnnotationAssertion(rdfs:label obo:DOID_0060321 "umbilical hernia"@en)
AnnotationAssertion(skos:broadMatch obo:DOID_0060321 "MESH:D006554")
AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "ICD10CM:K42")
AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "ICD9CM:553.1")
AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "NCI:C118375")
AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "SNOMEDCT_US_2023_03_01:49324006")
AnnotationAssertion(skos:exactMatch obo:DOID_0060321 "UMLS_CUI:C0019322")
AnnotationAssertion(skos:narrowMatch obo:DOID_0060321 "ICD9CM:551.1")
SubClassOf(obo:DOID_0060321 obo:DOID_5295)

# Class: obo:DOID_0060322 (mastoiditis)
Expand Down Expand Up @@ -32634,19 +32638,25 @@ AnnotationAssertion(oboInOwl:created_by obo:DOID_0060327 "emitraka")
AnnotationAssertion(oboInOwl:creation_date obo:DOID_0060327 "2015-02-25T17:54:05Z")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "ICD10CM:Q79.2")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "ICD9CM:756.72")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "MESH:D006554")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "MIM:164750")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "NCI:C98997")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "SNOMEDCT_US_2023_03_01:49324006")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "ORDO:660")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "SNOMEDCT_US_2023_03_01:5867007")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "UMLS_CUI:C0795690")
AnnotationAssertion(oboInOwl:hasDbXref obo:DOID_0060327 "UMLS_CUI:C1306503")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0060327 "exomphalos"@en)
AnnotationAssertion(oboInOwl:hasExactSynonym obo:DOID_0060327 "omphalocoele"@en)
AnnotationAssertion(oboInOwl:hasOBONamespace obo:DOID_0060327 "disease_ontology")
AnnotationAssertion(oboInOwl:id obo:DOID_0060327 "DOID:0060327")
AnnotationAssertion(oboInOwl:inSubset obo:DOID_0060327 doid:NCIthesaurus)
AnnotationAssertion(rdfs:label obo:DOID_0060327 "omphalocele"@en)
AnnotationAssertion(skos:broadMatch obo:DOID_0060327 "MESH:D006554")
AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "ICD10CM:Q79.2")
AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "ICD9CM:756.72")
AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "NCI:C98997")
AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "ORDO:660")
AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "SNOMEDCT_US_2023_03_01:5867007")
AnnotationAssertion(skos:exactMatch obo:DOID_0060327 "UMLS_CUI:C0795690")
AnnotationAssertion(skos:narrowMatch obo:DOID_0060327 "MIM:164750")
AnnotationAssertion(skos:narrowMatch obo:DOID_0060327 "MIM:310980")
SubClassOf(obo:DOID_0060327 obo:DOID_0080015)

# Class: obo:DOID_0060328 (anal fistula)
Expand Down

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