Merge pull request galaxyproject#356 from planemo-autoupdate/workflow…

…s/data-fetching/parallel-accession-download Updating workflows/data-fetching/parallel-accession-download from 0.1.9 to 0.1.10
Delphine-L · Mar 11, 2024 · 242a145 · 242a145
2 parents aa21307 + 64d5da3
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diff --git a/workflows/data-fetching/parallel-accession-download/CHANGELOG.md b/workflows/data-fetching/parallel-accession-download/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [0.1.10] 2024-03-11
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.10+galaxy0`
+
 ## [0.1.9] 2023-11-27
 
 ### Automatic update

diff --git a/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga b/workflows/data-fetching/parallel-accession-download/parallel-accession-download.ga
@@ -15,7 +15,7 @@
     ],
     "format-version": "0.1",
     "license": "MIT",
-    "release": "0.1.9",
+    "release": "0.1.10",
     "name": "Parallel Accession Download",
     "steps": {
         "0": {
@@ -56,7 +56,12 @@
                     "output_name": "output"
                 }
             },
-            "inputs": [],
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Split file",
+                    "name": "split_parms"
+                }
+            ],
             "label": "Split accessions to collection",
             "name": "Split file",
             "outputs": [
@@ -101,7 +106,12 @@
                     "output_name": "list_output_txt"
                 }
             },
-            "inputs": [],
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Parse parameter value",
+                    "name": "input1"
+                }
+            ],
             "label": "to parameter",
             "name": "Parse parameter value",
             "outputs": [
@@ -131,7 +141,7 @@
         },
         "3": {
             "annotation": "",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.10+galaxy0",
             "errors": null,
             "id": 3,
             "input_connections": {
@@ -140,7 +150,12 @@
                     "output_name": "text_param"
                 }
             },
-            "inputs": [],
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Faster Download and Extract Reads in FASTQ",
+                    "name": "input"
+                }
+            ],
             "label": "fasterq-dump",
             "name": "Faster Download and Extract Reads in FASTQ",
             "outputs": [
@@ -187,15 +202,15 @@
                     "output_name": "output_collection_other"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.8+galaxy1",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/sra_tools/fasterq_dump/3.0.10+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "e407b9da183a",
+                "changeset_revision": "de0f7e0a3896",
                 "name": "sra_tools",
                 "owner": "iuc",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"__job_resource\": {\"__current_case__\": 0, \"__job_resource__select\": \"no\"}, \"adv\": {\"seq_defline\": \"@$sn/$ri\", \"minlen\": null, \"split\": \"--split-3\", \"skip_technical\": true}, \"input\": {\"input_select\": \"accession_number\", \"__current_case__\": 0, \"accession\": {\"__class__\": \"ConnectedValue\"}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "3.0.8+galaxy1",
+            "tool_version": "3.0.10+galaxy0",
             "type": "tool",
             "uuid": "4d328e7b-df7d-4d3e-a60f-1ea12925f317",
             "when": null,
@@ -212,7 +227,12 @@
                     "output_name": "list_paired"
                 }
             },
-            "inputs": [],
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Apply rules",
+                    "name": "input"
+                }
+            ],
             "label": "flatten paired output",
             "name": "Apply rules",
             "outputs": [
@@ -259,7 +279,12 @@
                     "output_name": "output_collection"
                 }
             },
-            "inputs": [],
+            "inputs": [
+                {
+                    "description": "runtime parameter for tool Apply rules",
+                    "name": "input"
+                }
+            ],
             "label": "flatten single end output",
             "name": "Apply rules",
             "outputs": [