Skip to content

Commit

Permalink
Update INSTALL.md
Browse files Browse the repository at this point in the history
  • Loading branch information
bcrone authored Oct 23, 2024
1 parent f92be09 commit 020dc1a
Showing 1 changed file with 6 additions and 5 deletions.
11 changes: 6 additions & 5 deletions INSTALL.md
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ Binary installers for the latest released version are available at the [python p
The source code is currently hosted on GitHub at: https://github.com/Boyle-Lab/F-Seq2

### Prerequisites
- python >= 3.6
- python >= 3.9
- [bedtools](https://bedtools.readthedocs.io/en/latest/content/installation.html) >= 2.29.0 (required by pybedtools)


Expand Down Expand Up @@ -34,22 +34,22 @@ $ unzip master.zip
$ cd F-Seq2-master
# install all dependencies listed below
$ python setup.py install
$ pip install numpy==1.26.4
$ pip install .
```

### Integration test
```
$ cd Fseq2
$ python setup.py test
$ pytest
```
This may take 1 min


### Packages installed after installation

- numpy >= 1.15.4
- numpy == 1.26.4
- scipy >= 1.1.0
- pandas >= 0.24
- statsmodels
Expand All @@ -58,3 +58,4 @@ This may take 1 min
- pyBigWig
- h5py
- matplotlib
- cython

0 comments on commit 020dc1a

Please sign in to comment.