Reconstructions from 40+ implementations of neuron tracing algorithms on the gold166 datasets. The reconstructions were obtained using different computers at different time for reproducibility-test and optimization of all these algorithms. The data analyses are still ongoing (as of Oct 2016).
- "optimization_no__reconstructions_for_gold166_titan_edison_identical_2407.tar.gz" -- 2407 exactly-matching reconstructions before optimizing the "parameters" of different neuron tracing algorithms (the matching set was obtaining by comparing two sets independently generated on TITAN @ Oak Ridge National Lab and EDISON @ Lawrence Berkeley National Lab supercomputers about the same time)
- "optimization_yes__20161101_reconstruction_for_gold166_rhea_5571.tar.gz" -- 5571 reconstructions after optimization and merging of the results of different "parameter-optimized" neuron tracing algorithms
For faster download, these two tar balls may also be downloaded from Oak Ridge National Lab's BigNeuron site ( http://bigneuron.ornl.gov/data/optimization_no__reconstructions_for_gold166_titan_edison_identical_2407.tar.gz and http://bigneuron.ornl.gov/data/optimization_yes__20161101_reconstruction_for_gold166_rhea_5571.tar.gz )
Use of this release and datasets in it requires that you cite this work appropriately. Please cite the BigNeuron project (http://bigneuron.org) and the following publication:
Peng, H., Hawrylycz, M., Roskams, J., Hill, S., Spruston, N., Meijering, E., Ascoli, G.A (2015) "BigNeuron: large-scale 3D neuron reconstruction from optical microscopy images," Neuron, DOI: http://dx.doi.org/10.1016/j.neuron.2015.06.036, Vol. 87, No. 2, pp. 252-256, 2015. ( http://www.cell.com/neuron/abstract/S0896-6273%2815%2900599-1 )
The respective image datasets of these neurons can be downloaded from the previous release ( https://github.com/BigNeuron/Data/releases/tag/Gold166_v1 )