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KEGG terms in termgraph #47

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Nov 8, 2023
Merged

KEGG terms in termgraph #47

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4 changes: 2 additions & 2 deletions backend/src/queries.py
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Original file line number Diff line number Diff line change
Expand Up @@ -18,8 +18,8 @@ def get_terms_connected_by_overlap(driver: neo4j.Driver, term_ids: list[str], sp
MATCH (source:FT:{species})-[association:OVERLAP]->(target:FT:{species})
WHERE source.Term IN {term_ids}
AND target.Term IN {term_ids}
AND source.Category STARTS WITH "REACTOME"
AND target.Category STARTS WITH "REACTOME"
AND source.Category in ["KEGG", "REACTOME DATABASE ID RELEASE 38", "REACTOME"]
AND target.Category in ["KEGG", "REACTOME DATABASE ID RELEASE 38", "REACTOME"]
RETURN source, target, association.Score AS score;
"""
with driver.session() as session:
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