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_sources/timeline.md

@@ -6,22 +6,28 @@ Ready to make your model outputs accessible to other MIP participants? Please re
 
 Processed model outputs are invited for commit to the GitHub repository under **/comble-mip/output_xxx/YOUR_MODEL_NAME/** where *xxx* can be *les* or *scm*. Within your model's subdirectory, you should place any intermediate or sensitivity simulations in a directory called **devel**. Once you are happy with your simulations for the specifications outlined in the tables below, you may host them in a directory called **sandbox**. While these can be committed and removed at any time, note that we expect **sandbox** simulations to be finalized by the dates listed below.
 
-We request that you name your simulations as outlined below so that they can be readily compared with other runs using the same test specification. Please add a prefix to each of the file names to distinguish between other models. For example, for the *SCM/small-domain LES, liquid-only* specification in Part I, outputs from the DHARMA model should be named *DHARMA_Lx25_dx100_FixN_noice*.
+We request that you name your simulations as outlined below so that they can be readily compared with other runs using the same test specification. Please add a prefix to each of the file names to distinguish between other models. For example, for the *SCM, liquid-only* specification in Part I, outputs from the ModelE3 SCM model should be named ***ModelE3_FixN_noice***. If your submission is for an LES model, then we ask that you also include a prefix indicating the domain size (units of km) and grid cell spacing (units of m). For example, for the *Small-domain LES, liquid-only* specification in Part I, outputs from the DHARMA LES model should be named ***DHARMA_Lx25_dx100_FixN_noice***.
+
+Our requested prefixes for the domain size and grid cell spacing are as follows for the LES runs:
+* Small-domain (Lx=25.6 km, dx=100 m): ***Lx25_dx100***
+* Large-domain (Lx=128 km, dx=100 m): ***Lx125_dx100***
+
+If you have additional LES submissions that have different domain sizes and/or grid cell spacings, then we ask that you adjust your prefix information accordingly. 
 
 ## Part 1
 | Product                                                                                                                                                      | Simulation Name                                                                        | Request Date                                                                                    |
 |--------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------|
-| SCM/small-domain LES, liquid-only<br>SCM/small-domain LES with ice<br>SCM/small-domain LES with ice, default roughness lengths*<br>Large-domain LES with ice | Lx25_dx100_FixN_noice<br>Lx25_dx100_FixN<br>Lx25_dx100_FixN_def_z0<br>Lx125_dx100_FixN | Mar. 1, 2024<br>Mar. 1, 2024<br>Mar. 1, 2024<br><span style="color:red">**TBD**</span>** |
+| SCM/Small-domain LES, liquid-only<br>SCM/Small-domain LES with ice<br>SCM/Small-domain LES with ice, default roughness lengths*<br>Large-domain LES with ice | *{prefix}*_FixN_noice<br>*{prefix}*_FixN<br>*{prefix}*_FixN_def_z0<br>*{prefix}*_FixN | Mar. 1, 2024<br>Mar. 1, 2024<br>Mar. 1, 2024<br><span style="color:red">**TBD**</span>** |
 
 ## Part II
 | Product                                                                                                                                                      | Simulation Name                                                  | Request Date                                                                  |
 |--------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------|---------------------------------------------------------------------------|
-| SCM/small-domain LES, prognostic aerosol, diagnostic ice<br>SCM/small-domain LES, prognostic aerosol and ice<br>Large-domain LES, prognostic aerosol and ice | Lx25_dx100_ProgNa<br>Lx25_dx100_ProgNaNi<br>Lx125_dx100_ProgNaNi | Apr. 1, 2024<br>Apr. 1, 2024<br><span style="color:red">**TBD**</span>** |
+| SCM/Small-domain LES, prognostic aerosol, diagnostic ice<br>SCM/Small-domain LES, prognostic aerosol and ice<br>Large-domain LES, prognostic aerosol and ice | *{prefix}*_ProgNa<br>*{prefix}*_ProgNaNi<br>*{prefix}*_ProgNaNi | Apr. 1, 2024<br>Apr. 1, 2024<br><span style="color:red">**TBD**</span>** |
 
 ## Part II (optional; all SCM/small-domain LES)
 | Product                                                                                                                      | Simulation Name                                                                                | Request Date                                                     |
 |------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------|--------------------------------------------------------------|
-| Prognostic droplet, no ice<br>Prognostic droplet, diagnostic ice<br>Prognostic droplet and ice<br>Prognostic aerosol, no ice | Lx25_dx100_ProgNc_noice<br>Lx25_dx100_ProgNc<br>Lx25_dx100_ProgNcNi<br>Lx25_dx100_ProgNa_noice | <span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^ |
+| Prognostic droplet, no ice<br>Prognostic droplet, diagnostic ice<br>Prognostic droplet and ice<br>Prognostic aerosol, no ice | *{prefix}*_ProgNc_noice<br>*{prefix}*_ProgNc<br>*{prefix}*_ProgNcNi<br>*{prefix}*_ProgNa_noice | <span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^ |
 
 ## Notes
 *This simulation will use the default roughness length formulations in each host model. All other simulations will use the fixed roughness lengths as defined on the [Main Model Configuration page](https://arm-development.github.io/comble-mip/main_configuration.html).

notebooks/notebook-template.html

@@ -543,8 +543,8 @@ <h5>of further and further<a class="headerlink" href="#of-further-and-further" t
 <section id="header-levels">
 <h6>header levels<a class="headerlink" href="#header-levels" title="Permalink to this heading">#</a></h6>
 <p>as well <span class="math notranslate nohighlight">\(m = a * t / h\)</span> text! Similarly, you have access to other <span class="math notranslate nohighlight">\(\LaTeX\)</span> equation <a class="reference external" href="https://jupyter-notebook.readthedocs.io/en/stable/examples/Notebook/Typesetting%20Equations.html"><strong>functionality</strong></a> via MathJax (demo below from link),</p>
-<div class="amsmath math notranslate nohighlight" id="equation-53c86300-1864-4685-a8a1-d57a42470f00">
-<span class="eqno">()<a class="headerlink" href="#equation-53c86300-1864-4685-a8a1-d57a42470f00" title="Permalink to this equation">#</a></span>\[\begin{align}
+<div class="amsmath math notranslate nohighlight" id="equation-6472781c-7a00-4df8-b138-9863473aafb2">
+<span class="eqno">()<a class="headerlink" href="#equation-6472781c-7a00-4df8-b138-9863473aafb2" title="Permalink to this equation">#</a></span>\[\begin{align}
 \dot{x} &amp; = \sigma(y-x) \\
 \dot{y} &amp; = \rho x - y - xz \\
 \dot{z} &amp; = -\beta z + xy

timeline.html

@@ -384,7 +384,13 @@ <h1>Timeline &amp; File Naming Convention<a class="headerlink" href="#timeline-f
 <p>Ready to make your model outputs accessible to other MIP participants? Please refer to <a class="reference external" href="https://arm-development.github.io/comble-mip/CONTRIBUTING.html">this page</a> to learn how to upload your model outputs to the repository.</p>
 </div>
 <p>Processed model outputs are invited for commit to the GitHub repository under <strong>/comble-mip/output_xxx/YOUR_MODEL_NAME/</strong> where <em>xxx</em> can be <em>les</em> or <em>scm</em>. Within your model’s subdirectory, you should place any intermediate or sensitivity simulations in a directory called <strong>devel</strong>. Once you are happy with your simulations for the specifications outlined in the tables below, you may host them in a directory called <strong>sandbox</strong>. While these can be committed and removed at any time, note that we expect <strong>sandbox</strong> simulations to be finalized by the dates listed below.</p>
-<p>We request that you name your simulations as outlined below so that they can be readily compared with other runs using the same test specification. Please add a prefix to each of the file names to distinguish between other models. For example, for the <em>SCM/small-domain LES, liquid-only</em> specification in Part I, outputs from the DHARMA model should be named <em>DHARMA_Lx25_dx100_FixN_noice</em>.</p>
+<p>We request that you name your simulations as outlined below so that they can be readily compared with other runs using the same test specification. Please add a prefix to each of the file names to distinguish between other models. For example, for the <em>SCM, liquid-only</em> specification in Part I, outputs from the ModelE3 SCM model should be named <em><strong>ModelE3_FixN_noice</strong></em>. If your submission is for an LES model, then we ask that you also include a prefix indicating the domain size (units of km) and grid cell spacing (units of m). For example, for the <em>Small-domain LES, liquid-only</em> specification in Part I, outputs from the DHARMA LES model should be named <em><strong>DHARMA_Lx25_dx100_FixN_noice</strong></em>.</p>
+<p>Our requested prefixes for the domain size and grid cell spacing are as follows for the LES runs:</p>
+<ul class="simple">
+<li><p>Small-domain (Lx=25.6 km, dx=100 m): <em><strong>Lx25_dx100</strong></em></p></li>
+<li><p>Large-domain (Lx=128 km, dx=100 m): <em><strong>Lx125_dx100</strong></em></p></li>
+</ul>
+<p>If you have additional LES submissions that have different domain sizes and/or grid cell spacings, then we ask that you adjust your prefix information accordingly.</p>
 <section id="part-1">
 <h2>Part 1<a class="headerlink" href="#part-1" title="Permalink to this heading">#</a></h2>
 <table class="table">
@@ -395,8 +401,8 @@ <h2>Part 1<a class="headerlink" href="#part-1" title="Permalink to this heading"
 </tr>
 </thead>
 <tbody>
-<tr class="row-even"><td><p>SCM/small-domain LES, liquid-only<br>SCM/small-domain LES with ice<br>SCM/small-domain LES with ice, default roughness lengths*<br>Large-domain LES with ice</p></td>
-<td><p>Lx25_dx100_FixN_noice<br>Lx25_dx100_FixN<br>Lx25_dx100_FixN_def_z0<br>Lx125_dx100_FixN</p></td>
+<tr class="row-even"><td><p>SCM/Small-domain LES, liquid-only<br>SCM/Small-domain LES with ice<br>SCM/Small-domain LES with ice, default roughness lengths*<br>Large-domain LES with ice</p></td>
+<td><p><em>{prefix}</em>_FixN_noice<br><em>{prefix}</em>_FixN<br><em>{prefix}</em>_FixN_def_z0<br><em>{prefix}</em>_FixN</p></td>
 <td><p>Mar. 1, 2024<br>Mar. 1, 2024<br>Mar. 1, 2024<br><span style="color:red"><strong>TBD</strong></span>**</p></td>
 </tr>
 </tbody>
@@ -412,8 +418,8 @@ <h2>Part II<a class="headerlink" href="#part-ii" title="Permalink to this headin
 </tr>
 </thead>
 <tbody>
-<tr class="row-even"><td><p>SCM/small-domain LES, prognostic aerosol, diagnostic ice<br>SCM/small-domain LES, prognostic aerosol and ice<br>Large-domain LES, prognostic aerosol and ice</p></td>
-<td><p>Lx25_dx100_ProgNa<br>Lx25_dx100_ProgNaNi<br>Lx125_dx100_ProgNaNi</p></td>
+<tr class="row-even"><td><p>SCM/Small-domain LES, prognostic aerosol, diagnostic ice<br>SCM/Small-domain LES, prognostic aerosol and ice<br>Large-domain LES, prognostic aerosol and ice</p></td>
+<td><p><em>{prefix}</em>_ProgNa<br><em>{prefix}</em>_ProgNaNi<br><em>{prefix}</em>_ProgNaNi</p></td>
 <td><p>Apr. 1, 2024<br>Apr. 1, 2024<br><span style="color:red"><strong>TBD</strong></span>**</p></td>
 </tr>
 </tbody>
@@ -430,7 +436,7 @@ <h2>Part II (optional; all SCM/small-domain LES)<a class="headerlink" href="#par
 </thead>
 <tbody>
 <tr class="row-even"><td><p>Prognostic droplet, no ice<br>Prognostic droplet, diagnostic ice<br>Prognostic droplet and ice<br>Prognostic aerosol, no ice</p></td>
-<td><p>Lx25_dx100_ProgNc_noice<br>Lx25_dx100_ProgNc<br>Lx25_dx100_ProgNcNi<br>Lx25_dx100_ProgNa_noice</p></td>
+<td><p><em>{prefix}</em>_ProgNc_noice<br><em>{prefix}</em>_ProgNc<br><em>{prefix}</em>_ProgNcNi<br><em>{prefix}</em>_ProgNa_noice</p></td>
 <td><p><span style="color:red"><strong>TBD</strong></span>^<br><span style="color:red"><strong>TBD</strong></span>^<br><span style="color:red"><strong>TBD</strong></span>^<br><span style="color:red"><strong>TBD</strong></span>^</p></td>
 </tr>
 </tbody>