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twjuliano committed Nov 27, 2023
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22 changes: 12 additions & 10 deletions _sources/timeline.md
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Expand Up @@ -6,24 +6,26 @@ Ready to make your model outputs accessible to other MIP participants? Please re

Processed model outputs are invited for commit to the GitHub repository under **/comble-mip/output_xxx/YOUR_MODEL_NAME/** where *xxx* can be *les* or *scm*. Within your model's subdirectory, you should place any intermediate or sensitivity simulations in a directory called **devel**. Once you are happy with your simulations for the specifications outlined in the tables below, you may host them in a directory called **sandbox**. While these can be committed and removed at any time, note that we expect **sandbox** simulations to be finalized by the dates listed below.

We request that you name your simulations as outlined below so that they can be readily compared with other runs using the same test specification. Please add a prefix to each of the file names to distinguish between other models. For example, for the *SCM/small-domain LES, liquid-only* specification in Phase I, outputs from the DHARMA model should be named *DHARMA_Lx25_dx100_FixN_noice*.
We request that you name your simulations as outlined below so that they can be readily compared with other runs using the same test specification. Please add a prefix to each of the file names to distinguish between other models. For example, for the *SCM/small-domain LES, liquid-only* specification in Part I, outputs from the DHARMA model should be named *DHARMA_Lx25_dx100_FixN_noice*.

## Phase 1
| Product | Simulation Name | Due Date |
## Part 1
| Product | Simulation Name | Request Date |
|--------------------------------------------------------------------------------------------------------------------------------------------------------------|----------------------------------------------------------------------------------------|---------------------------------------------------------------------------------------------|
| SCM/small-domain LES, liquid-only<br>SCM/small-domain LES with ice<br>SCM/small-domain LES with ice, default roughness lengths*<br>Large domain LES with ice | Lx25_dx100_FixN_noice<br>Lx25_dx100_FixN<br>Lx25_dx100_FixN_def_z0<br>Lx125_dx100_FixN | Dec. 15, 2023<br>Dec. 15, 2023<br>Dec. 15, 2023<br><span style="color:red">**TBD**</span>** |
| SCM/small-domain LES, liquid-only<br>SCM/small-domain LES with ice<br>SCM/small-domain LES with ice, default roughness lengths*<br>Large-domain LES with ice | Lx25_dx100_FixN_noice<br>Lx25_dx100_FixN<br>Lx25_dx100_FixN_def_z0<br>Lx125_dx100_FixN | Mar. 1, 2024<br>Mar. 1, 2024<br>Mar. 1, 2024<br><span style="color:red">**TBD**</span>** |

## Phase II
| Product | Simulation Name | Due Date |
## Part II
| Product | Simulation Name | Request Date |
|--------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------|---------------------------------------------------------------------------|
| SCM/small-domain LES, prognostic aerosol, diagnostic ice<br>SCM/small-domain LES, prognostic aerosol and ice<br>Large domain LES, prognostic aerosol and ice | Lx25_dx100_ProgNa<br>Lx25_dx100_ProgNaNi<br>Lx125_dx100_ProgNaNi | Jan. 15, 2024<br>Jan. 15, 2024<br><span style="color:red">**TBD**</span>** |
| SCM/small-domain LES, prognostic aerosol, diagnostic ice<br>SCM/small-domain LES, prognostic aerosol and ice<br>Large-domain LES, prognostic aerosol and ice | Lx25_dx100_ProgNa<br>Lx25_dx100_ProgNaNi<br>Lx125_dx100_ProgNaNi | Apr. 1, 2024<br>Apr. 1, 2024<br><span style="color:red">**TBD**</span>** |

## Phase II (optional)
| Product | Simulation Name | Due Date |
## Part II (optional; all SCM/small-domain LES)
| Product | Simulation Name | Request Date |
|------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------|--------------------------------------------------------------|
| Prognostic droplet, no ice<br>Prognostic droplet, diagnostic ice<br>Prognostic droplet and ice<br>Prognostic aerosol, no ice | Lx25_dx100_ProgNc_noice<br>Lx25_dx100_ProgNc<br>Lx25_dx100_ProgNcNi<br>Lx25_dx100_ProgNa_noice | Apr. 1, 2024<br>Apr. 1, 2024<br>Apr. 1, 2024<br>Apr. 1, 2024 |
| Prognostic droplet, no ice<br>Prognostic droplet, diagnostic ice<br>Prognostic droplet and ice<br>Prognostic aerosol, no ice | Lx25_dx100_ProgNc_noice<br>Lx25_dx100_ProgNc<br>Lx25_dx100_ProgNcNi<br>Lx25_dx100_ProgNa_noice | <span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^<br><span style="color:red">**TBD**</span>^ |

## Notes
*This simulation will use the default roughness length formulations in each host model. All other simulations will use the fixed roughness lengths as defined on the [Main Model Configuration page](https://arm-development.github.io/comble-mip/main_configuration.html).
<br>
**Given its high computational cost, we suggest that participants refrain from running this setup in case there are any last minute tweaks to the model forcing; for instance, large-scale forcing required to generate realistic roll structures.
<br>
^We plan to first evaluate model outputs before recommending a request date for these additional sensitivity simulations.
4 changes: 2 additions & 2 deletions notebooks/notebook-template.html
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Expand Up @@ -543,8 +543,8 @@ <h5>of further and further<a class="headerlink" href="#of-further-and-further" t
<section id="header-levels">
<h6>header levels<a class="headerlink" href="#header-levels" title="Permalink to this heading">#</a></h6>
<p>as well <span class="math notranslate nohighlight">\(m = a * t / h\)</span> text! Similarly, you have access to other <span class="math notranslate nohighlight">\(\LaTeX\)</span> equation <a class="reference external" href="https://jupyter-notebook.readthedocs.io/en/stable/examples/Notebook/Typesetting%20Equations.html"><strong>functionality</strong></a> via MathJax (demo below from link),</p>
<div class="amsmath math notranslate nohighlight" id="equation-55c78766-e47b-4b8d-a608-6cbc19fddbbe">
<span class="eqno">()<a class="headerlink" href="#equation-55c78766-e47b-4b8d-a608-6cbc19fddbbe" title="Permalink to this equation">#</a></span>\[\begin{align}
<div class="amsmath math notranslate nohighlight" id="equation-e4d9c835-9ba7-4bab-b551-5a22476bee08">
<span class="eqno">()<a class="headerlink" href="#equation-e4d9c835-9ba7-4bab-b551-5a22476bee08" title="Permalink to this equation">#</a></span>\[\begin{align}
\dot{x} &amp; = \sigma(y-x) \\
\dot{y} &amp; = \rho x - y - xz \\
\dot{z} &amp; = -\beta z + xy
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46 changes: 24 additions & 22 deletions timeline.html
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Expand Up @@ -362,9 +362,9 @@ <h2> Contents </h2>
</div>
<nav aria-label="Page">
<ul class="visible nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#phase-1">Phase 1</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#phase-ii">Phase II</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#phase-ii-optional">Phase II (optional)</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#part-1">Part 1</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#part-ii">Part II</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#part-ii-optional-all-scm-small-domain-les">Part II (optional; all SCM/small-domain LES)</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#notes">Notes</a></li>
</ul>
</nav>
Expand All @@ -384,54 +384,54 @@ <h1>Timeline &amp; File Naming Convention<a class="headerlink" href="#timeline-f
<p>Ready to make your model outputs accessible to other MIP participants? Please refer to <a class="reference external" href="https://arm-development.github.io/comble-mip/CONTRIBUTING.html">this page</a> to learn how to upload your model outputs to the repository.</p>
</div>
<p>Processed model outputs are invited for commit to the GitHub repository under <strong>/comble-mip/output_xxx/YOUR_MODEL_NAME/</strong> where <em>xxx</em> can be <em>les</em> or <em>scm</em>. Within your model’s subdirectory, you should place any intermediate or sensitivity simulations in a directory called <strong>devel</strong>. Once you are happy with your simulations for the specifications outlined in the tables below, you may host them in a directory called <strong>sandbox</strong>. While these can be committed and removed at any time, note that we expect <strong>sandbox</strong> simulations to be finalized by the dates listed below.</p>
<p>We request that you name your simulations as outlined below so that they can be readily compared with other runs using the same test specification. Please add a prefix to each of the file names to distinguish between other models. For example, for the <em>SCM/small-domain LES, liquid-only</em> specification in Phase I, outputs from the DHARMA model should be named <em>DHARMA_Lx25_dx100_FixN_noice</em>.</p>
<section id="phase-1">
<h2>Phase 1<a class="headerlink" href="#phase-1" title="Permalink to this heading">#</a></h2>
<p>We request that you name your simulations as outlined below so that they can be readily compared with other runs using the same test specification. Please add a prefix to each of the file names to distinguish between other models. For example, for the <em>SCM/small-domain LES, liquid-only</em> specification in Part I, outputs from the DHARMA model should be named <em>DHARMA_Lx25_dx100_FixN_noice</em>.</p>
<section id="part-1">
<h2>Part 1<a class="headerlink" href="#part-1" title="Permalink to this heading">#</a></h2>
<table class="table">
<thead>
<tr class="row-odd"><th class="head"><p>Product</p></th>
<th class="head"><p>Simulation Name</p></th>
<th class="head"><p>Due Date</p></th>
<th class="head"><p>Request Date</p></th>
</tr>
</thead>
<tbody>
<tr class="row-even"><td><p>SCM/small-domain LES, liquid-only<br>SCM/small-domain LES with ice<br>SCM/small-domain LES with ice, default roughness lengths*<br>Large domain LES with ice</p></td>
<tr class="row-even"><td><p>SCM/small-domain LES, liquid-only<br>SCM/small-domain LES with ice<br>SCM/small-domain LES with ice, default roughness lengths*<br>Large-domain LES with ice</p></td>
<td><p>Lx25_dx100_FixN_noice<br>Lx25_dx100_FixN<br>Lx25_dx100_FixN_def_z0<br>Lx125_dx100_FixN</p></td>
<td><p>Dec. 15, 2023<br>Dec. 15, 2023<br>Dec. 15, 2023<br><span style="color:red"><strong>TBD</strong></span>**</p></td>
<td><p>Mar. 1, 2024<br>Mar. 1, 2024<br>Mar. 1, 2024<br><span style="color:red"><strong>TBD</strong></span>**</p></td>
</tr>
</tbody>
</table>
</section>
<section id="phase-ii">
<h2>Phase II<a class="headerlink" href="#phase-ii" title="Permalink to this heading">#</a></h2>
<section id="part-ii">
<h2>Part II<a class="headerlink" href="#part-ii" title="Permalink to this heading">#</a></h2>
<table class="table">
<thead>
<tr class="row-odd"><th class="head"><p>Product</p></th>
<th class="head"><p>Simulation Name</p></th>
<th class="head"><p>Due Date</p></th>
<th class="head"><p>Request Date</p></th>
</tr>
</thead>
<tbody>
<tr class="row-even"><td><p>SCM/small-domain LES, prognostic aerosol, diagnostic ice<br>SCM/small-domain LES, prognostic aerosol and ice<br>Large domain LES, prognostic aerosol and ice</p></td>
<tr class="row-even"><td><p>SCM/small-domain LES, prognostic aerosol, diagnostic ice<br>SCM/small-domain LES, prognostic aerosol and ice<br>Large-domain LES, prognostic aerosol and ice</p></td>
<td><p>Lx25_dx100_ProgNa<br>Lx25_dx100_ProgNaNi<br>Lx125_dx100_ProgNaNi</p></td>
<td><p>Jan. 15, 2024<br>Jan. 15, 2024<br><span style="color:red"><strong>TBD</strong></span>**</p></td>
<td><p>Apr. 1, 2024<br>Apr. 1, 2024<br><span style="color:red"><strong>TBD</strong></span>**</p></td>
</tr>
</tbody>
</table>
</section>
<section id="phase-ii-optional">
<h2>Phase II (optional)<a class="headerlink" href="#phase-ii-optional" title="Permalink to this heading">#</a></h2>
<section id="part-ii-optional-all-scm-small-domain-les">
<h2>Part II (optional; all SCM/small-domain LES)<a class="headerlink" href="#part-ii-optional-all-scm-small-domain-les" title="Permalink to this heading">#</a></h2>
<table class="table">
<thead>
<tr class="row-odd"><th class="head"><p>Product</p></th>
<th class="head"><p>Simulation Name</p></th>
<th class="head"><p>Due Date</p></th>
<th class="head"><p>Request Date</p></th>
</tr>
</thead>
<tbody>
<tr class="row-even"><td><p>Prognostic droplet, no ice<br>Prognostic droplet, diagnostic ice<br>Prognostic droplet and ice<br>Prognostic aerosol, no ice</p></td>
<td><p>Lx25_dx100_ProgNc_noice<br>Lx25_dx100_ProgNc<br>Lx25_dx100_ProgNcNi<br>Lx25_dx100_ProgNa_noice</p></td>
<td><p>Apr. 1, 2024<br>Apr. 1, 2024<br>Apr. 1, 2024<br>Apr. 1, 2024</p></td>
<td><p><span style="color:red"><strong>TBD</strong></span>^<br><span style="color:red"><strong>TBD</strong></span>^<br><span style="color:red"><strong>TBD</strong></span>^<br><span style="color:red"><strong>TBD</strong></span>^</p></td>
</tr>
</tbody>
</table>
Expand All @@ -440,7 +440,9 @@ <h2>Phase II (optional)<a class="headerlink" href="#phase-ii-optional" title="Pe
<h2>Notes<a class="headerlink" href="#notes" title="Permalink to this heading">#</a></h2>
<p>*This simulation will use the default roughness length formulations in each host model. All other simulations will use the fixed roughness lengths as defined on the <a class="reference external" href="https://arm-development.github.io/comble-mip/main_configuration.html">Main Model Configuration page</a>.
<br>
**Given its high computational cost, we suggest that participants refrain from running this setup in case there are any last minute tweaks to the model forcing; for instance, large-scale forcing required to generate realistic roll structures.</p>
**Given its high computational cost, we suggest that participants refrain from running this setup in case there are any last minute tweaks to the model forcing; for instance, large-scale forcing required to generate realistic roll structures.
<br>
^We plan to first evaluate model outputs before recommending a request date for these additional sensitivity simulations.</p>
</section>
</section>

Expand Down Expand Up @@ -507,9 +509,9 @@ <h2>Notes<a class="headerlink" href="#notes" title="Permalink to this heading">#
</div>
<nav class="bd-toc-nav page-toc">
<ul class="visible nav section-nav flex-column">
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#phase-1">Phase 1</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#phase-ii">Phase II</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#phase-ii-optional">Phase II (optional)</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#part-1">Part 1</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#part-ii">Part II</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#part-ii-optional-all-scm-small-domain-les">Part II (optional; all SCM/small-domain LES)</a></li>
<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#notes">Notes</a></li>
</ul>
</nav></div>
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